Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq211269 140 6e-31 seq124495 138 2e-30 seq144170 120 6e-25 seq212700 84.2 4e-14 seq146992 84.2 4e-14 seq146993 78.8 2e-12 >seq211269 Length=2841 Score = 140 bits (154), Expect = 6e-31 Identities = 102/116 (88%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCG-GCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||| | || | |||| |||||||||||||||||||||||||| Sbjct 911 GCTTCTTAGAGGGACTGCTGCGCGCCTAGCCAGCGGAAGTTTGAGGCAATAACAGGTCTG 852 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 851 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATTAATCCAACGAGT 796 >seq124495 Length=274 Score = 138 bits (152), Expect = 2e-30 Identities = 85/91 (93%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 238 GGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCA 297 ||||||| ||||| |||||||| ||||||||||||||| ||||||||||||| ||||||| Sbjct 274 GGATAGATCATTGTAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCA 215 Query 298 GCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || |||||||||||||||||||||||||||| Sbjct 214 GCTCGCGTTGATTACGTCCCTGCCCTTTGTA 184 >seq144170 Length=127 Score = 120 bits (132), Expect = 6e-25 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||| ||||||| ||||| Sbjct 18 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGTGGATAGATCATTG 77 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 |||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 78 TAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGC 126 >seq212700 Length=32774 Score = 84.2 bits (92), Expect = 4e-14 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTA-TCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||| ||||||||||| | |||| |||| |||||||||||||||||||||||||| Sbjct 1111 GCTTATTAGAGGGACTGCTACGCTCCTAGCCAGCGGAAGTTTGAGGCAATAACAGGTCTG 1052 Query 129 TGATGCCCTTAGATGTTC 146 ||||||||||||||||| Sbjct 1051 GGATGCCCTTAGATGTTC 1034 >seq146992 Length=96 Score = 84.2 bits (92), Expect = 4e-14 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||||||||||| ||||| Sbjct 81 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 22 Query 251 CAATTATTGCTCTTCAACGAG 271 |||||||| ||||||||||| Sbjct 21 TAATTATTGATCTTCAACGAG 1 >seq146993 Length=127 Score = 78.8 bits (86), Expect = 2e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| ||||||||| ||| | |||||||||||||||| ||||| Sbjct 81 CCTGGGCCGATAGGTCCTGGTAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 22 Query 251 CAATTATTGCTCTTCAACGAG 271 |||||||| ||||||||||| Sbjct 21 TAATTATTGATCTTCAACGAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945076974336