Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq119719 134 5e-29 seq83059 134 5e-29 seq30243 131 6e-28 seq165067 107 7e-21 seq156710 107 7e-21 seq113629 107 7e-21 seq14236 107 7e-21 seq62752 102 3e-19 seq30242 102 3e-19 seq18483 100 1e-18 seq22681 98.7 3e-18 seq106789 95.1 4e-17 seq89286 95.1 4e-17 seq117228 80.6 9e-13 seq16113 78.8 3e-12 >seq119719 Length=127 Score = 134 bits (148), Expect = 5e-29 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| |||| ||||||||| |||||| |||||||||||||| ||| ||||||||||| Sbjct 16 GAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCAGACAAGGAATT 75 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 76 TCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 117 >seq83059 Length=127 Score = 134 bits (148), Expect = 5e-29 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| |||| ||||||||| |||||| |||||||||||||| ||||||||| ||||| Sbjct 10 GAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAATGAATT 69 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 70 TCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 111 >seq30243 Length=127 Score = 131 bits (144), Expect = 6e-28 Identities = 89/100 (89%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 373 GACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 432 ||||| |||| ||||||||| |||||| |||||||||||||| ||||||||||||||||| Sbjct 1 GACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTC 60 Query 433 GCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 ||| |||||||| ||||| ||||| ||||||||||||| Sbjct 61 GCTTCCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 100 >seq165067 Length=88 Score = 107 bits (118), Expect = 7e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 394 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAG 453 |||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| | Sbjct 86 CCATTCATGCAGGTCGGAACTCTCCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGG 27 Query 454 TTACCACCGCCGTTTACTG 472 |||| ||||||||||||| Sbjct 26 TTACAGCCGCCGTTTACTG 8 >seq156710 Length=127 Score = 107 bits (118), Expect = 7e-21 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||| ||| | | ||||||| |||| ||||||||| |||||| ||||||||| Sbjct 36 AATTTCACTAGGCTAATACTGGAGACAGAAGGGAAGTCGTTACACCATTCATGCAGGTCG 95 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTA 441 ||||| |||||||||||||||||||||||||| Sbjct 96 GAACTCACCCGACAAGGAATTTCGCTACCTTA 127 >seq113629 Length=127 Score = 107 bits (118), Expect = 7e-21 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||| ||| | | ||||||| | || ||||||||| |||||| ||||||||| Sbjct 34 AATTTCACTAGGCTAATACTGGAGACAGTATGGAAGTCGTTACACCATTCATGCAGGTCG 93 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGG 443 ||||| |||||||||||||||||||||||||||| Sbjct 94 GAACTCACCCGACAAGGAATTTCGCTACCTTAGG 127 >seq14236 Length=127 Score = 107 bits (118), Expect = 7e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 394 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAG 453 |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| | Sbjct 2 CCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGG 61 Query 454 TTACCACCGCCGTTTACTG 472 || | ||||||||||||| Sbjct 62 TTTCAGCCGCCGTTTACTG 80 >seq62752 Length=71 Score = 102 bits (112), Expect = 3e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 385 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 |||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 GTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGA 60 Query 445 TGGTTATAGTT 455 ||||| ||| Sbjct 61 CCGTTATGGTT 71 >seq30242 Length=69 Score = 102 bits (112), Expect = 3e-19 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 373 GACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 432 ||||| |||| ||||||||| |||||| |||||||||||||| ||||||||||||||||| Sbjct 1 GACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTC 60 Query 433 GCTACCTTA 441 ||||||||| Sbjct 61 GCTACCTTA 69 >seq18483 Length=127 Score = 100 bits (110), Expect = 1e-18 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 398 TCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTAC 457 || |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| Sbjct 127 TCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTAC 68 Query 458 CACCGCCGTTTACTG 472 | ||||||||||| Sbjct 67 AGCAGCCGTTTACTG 53 >seq22681 Length=67 Score = 98.7 bits (108), Expect = 3e-18 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 381 GGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 440 || ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1 GGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTT 60 Query 441 AGGA 444 |||| Sbjct 61 AGGA 64 >seq106789 Length=64 Score = 95.1 bits (104), Expect = 4e-17 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 385 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 |||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 63 GTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGA 4 >seq89286 Length=64 Score = 95.1 bits (104), Expect = 4e-17 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 385 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 |||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 GTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGA 60 >seq117228 Length=76 Score = 80.6 bits (88), Expect = 9e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| | Sbjct 1 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTGAGAT 60 Query 477 TTCAATT 483 || |||| Sbjct 61 TTAAATT 67 >seq16113 Length=66 Score = 78.8 bits (86), Expect = 3e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| Sbjct 1 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1698584291712