Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20pearcei_20[genbank_20GCA_5F000826505.1_202015-01-07] 224,137 sequences; 115,614,128 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq211269 385 1e-104 seq48517 168 2e-39 seq53367 154 4e-35 seq12591 154 4e-35 seq150437 132 1e-28 seq153606 77.0 1e-11 >seq211269 Length=2841 Score = 385 bits (426), Expect = 1e-104 Identities = 378/495 (76%), Gaps = 71/495 (14%) Strand=Plus/Plus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| Sbjct 2073 AATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCCGG 2132 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||| Sbjct 2133 AATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGGTAGGCCTCTATCCTACCATCG 2192 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG---GCTCAAGG-------CCAT 249 ||||||||||||||||||||||||||||| | |||||| | ||||| || Sbjct 2193 AAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGTCCCCACAAGGAGGACATGAAT 2252 Query 250 GCGATTCGTTA-AGTTATTATGAATCACCAAGGAGCCCCGAAG--------GGC-GTTGG 299 ||||| || | ||||| ||||||||||| ||||| |||| ||| | ||| Sbjct 2253 GCGATCCGAAAGAGTTACTATGAATCACC-AGGAGTGTTGAAGCCGTTGCCGGCTGCTGG 2311 Query 300 TTTTTTATCTAATAAATACACCCCT-------TCCGAAG--------------------- 331 ||||| | |||||||||||| |||| | ||| | Sbjct 2312 TTTTTAACCTAATAAATACATCCCTCTGCGCATGCGAGGACGAGGCCGTGAAGCCCCGCC 2371 Query 332 --------TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG 383 ||||| || ||||||||||||||||||||||||||||||||||| |||| Sbjct 2372 CCCCGCGCTCGGGACCTTGCGCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAG 2431 Query 384 -------------TAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 ||| || ||||||||||| ||||||||||||||||||||| |||| Sbjct 2432 GTAAAAAAAGACAAAAGAGACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCA 2491 Query 431 GTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 || || | ||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 2492 GTCTCGCCGTATAAACAAGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 2551 Query 490 TATGACTACTGGCAG 504 ||||||||||||||| Sbjct 2552 TATGACTACTGGCAG 2566 >seq48517 Length=127 Score = 168 bits (186), Expect = 2e-39 Identities = 107/115 (93%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 29 GAGC-CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCG 87 |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 13 GAGCGCCTGTATTGTTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGGAATTTGCG 72 Query 88 CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAAT 142 ||||||||||||||||| || ||||||||| |||||||||||||||||||||||| Sbjct 73 CGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAAT 127 >seq53367 Length=127 Score = 154 bits (170), Expect = 4e-35 Identities = 109/122 (89%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||| | Sbjct 122 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTGC 63 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 62 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 3 Query 119 TT 120 || Sbjct 2 TT 1 >seq12591 Length=127 Score = 154 bits (170), Expect = 4e-35 Identities = 109/122 (89%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||| | Sbjct 122 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTCC 63 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 62 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 3 Query 119 TT 120 || Sbjct 2 TT 1 >seq150437 Length=105 Score = 132 bits (146), Expect = 1e-28 Identities = 86/93 (92%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 29 GAGC-CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCG 87 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 93 GAGCGCCTGTATTGTTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCG 34 Query 88 CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||||||||||| || ||||||||| || Sbjct 33 CGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATT 1 >seq153606 Length=183 Score = 77.0 bits (84), Expect = 1e-11 Identities = 42/42 (100%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507014634752