Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq213115 165 1e-38 seq34670 107 3e-21 seq215672 78.8 1e-12 >seq213115 Length=3823 Score = 165 bits (182), Expect = 1e-38 Identities = 111/120 (93%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 1147 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 1090 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| |||||||| Sbjct 1089 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAGATT 1030 Score = 140 bits (154), Expect = 5e-31 Identities = 85/89 (96%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 945 GACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 886 Query 206 ACCTGTTATTGCCTCAAACTTCCG-TGGC 233 |||||||||||||||||||||||| |||| Sbjct 885 ACCTGTTATTGCCTCAAACTTCCGCTGGC 857 >seq34670 Length=127 Score = 107 bits (118), Expect = 3e-21 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAG 116 |||||||||||||| ||| |||| |||||||||||||||| |||||| |||||| ||||| Sbjct 127 TTCCTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAG 68 Query 117 ATTACCCGGACCTGTCGGCCAAGG 140 ||| ||||||||| |||||| ||| Sbjct 67 ATTCCCCGGACCTATCGGCCCAGG 44 >seq215672 Length=42019 Score = 78.8 bits (86), Expect = 1e-12 Identities = 48/50 (96%), Gaps = 1/50 (2%) Strand=Plus/Plus Query 185 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCG-TGGC 233 ||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 998 GAACATCTAAGGGCATCCCAGACCTGTTATTGCCTCAAACTTCCGCTGGC 1047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750364648630