Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq213115 203 6e-50 seq146078 73.4 7e-11 >seq213115 Length=3823 Score = 203 bits (224), Expect = 6e-50 Identities = 175/214 (82%), Gaps = 12/214 (6%) Strand=Plus/Plus Query 116 CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTTT- 171 ||||||||||||||||| ||||| ||||||||| || | ||||||| |||||||| Sbjct 33 CGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATTTTCAGTTGGTTTT 92 Query 172 -------CTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATT 224 | ||||| ||||||||||||||||||||| ||||| | | |||| |||| Sbjct 93 GGCAGCGCGAGGACTAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATT 152 Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 |||||||||||||||||||||||||| |||| ||||| |||||||||| | |||||| Sbjct 153 GTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGG 212 Query 285 ATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||| |||||||||||||||| Sbjct 213 ATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 245 >seq146078 Length=127 Score = 73.4 bits (80), Expect = 7e-11 Identities = 78/104 (75%), Gaps = 12/104 (12%) Strand=Plus/Plus Query 55 GTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC------ 108 || || ||| |||| | ||||| |||||||||||||| ||||||||||||| Sbjct 24 GTTCCTGGGGCCCAGATCGTTTACCGTGAAAAAATTAGAGGGTTCAAAGCAGGCAGATCC 83 Query 109 -CTTTGCT-----CGAATACATTAGCATGGAATAATAGAATAGG 146 ||| || ||||||||||||||||| ||||| ||||||| Sbjct 84 AATTTTCTGCCACCGAATACATTAGCATGGGATAATGGAATAGG 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913145540736