Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq213115 172 2e-40 seq203568 116 2e-23 seq166087 95.1 5e-17 seq205025 86.0 3e-14 >seq213115 Length=3823 Score = 172 bits (190), Expect = 2e-40 Identities = 238/337 (71%), Gaps = 37/337 (11%) Strand=Plus/Plus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || || | | || ||||||||| ||||||||||||||||||||||| Sbjct 3317 GATGCTGGCGGAACGGCGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAC 3376 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAG-------------TGAA 488 | |||||||| ||||| |||||| | ||||| | |||||| | | Sbjct 3377 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGGAGTGAAAGCAGAGGGCGGCATTAAG 3436 Query 489 CGG-------AGGTGGGAACCCGTGAGGGTGC--------------ACCATCGACCGATC 527 ||| ||||||||| || | |||| |||| || |||| | Sbjct 3437 CGGTCGCCTGAGGTGGGAAGGGGTATGCGTGCGCGCGTGCTCCCGCACCACCGGCCGACC 3496 Query 528 CTGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586 ||| | ||| || || |||||| ||||| || |||||||||||||||||| |||| Sbjct 3497 TGGATTTTCTT--GAAGGGTTTGAGCCAGAGCGTATTTGTTGGGACCCGAAAGATTGTGA 3554 Query 587 ACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGG 646 |||||| ||| ||| |||||||||||||||||||||||||| || || | | ||| Sbjct 3555 ACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTGA 3614 Query 647 CGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| || || | ||| ||||||||||| Sbjct 3615 CGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 3651 Score = 111 bits (122), Expect = 7e-22 Identities = 102/127 (80%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 76 GGTAAATTTCTTCTAAAGCTAAATATTG---GCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| | | || ||||||||||| || |||||||||||||| ||||||| || Sbjct 2849 GGTAAATCCCACCCAAGGCTAAATATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGT 2908 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 || ||||||||||||| |||||| |||||||| | ||||| | |||||||||| || Sbjct 2909 GAGGGAAAGATGAAAAGGACTTTGAAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAG 2967 Query 193 GGAAGCG 199 ||||||| Sbjct 2968 GGAAGCG 2974 >seq203568 Length=5592 Score = 116 bits (128), Expect = 2e-23 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || || |||||| |||||||| |||||||||| ||||||| |||||||||| ||| Sbjct 2167 GAAGGGTTTGAGCCAGAGCATATTTGTTGGGACCTGAAAGATTGTGAACTATGGGTGACC 2108 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||| |||||||||||||||||||||||||| | || | | ||| ||||||||| | Sbjct 2107 AGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCAAAGTGATACTGATGTGCAAATCATT 2048 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 | || | ||| |||||||| || Sbjct 2047 CATCTGAGTTGCCTATAGGGGTGA 2024 >seq166087 Length=127 Score = 95.1 bits (104), Expect = 5e-17 Identities = 80/98 (82%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 29 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGGGGTAAATCCCACCCAAGGCTAAAT 88 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGA 134 |||| || |||||||||||||| ||||||| |||| Sbjct 89 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGA 126 >seq205025 Length=5003 Score = 86.0 bits (94), Expect = 3e-14 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTG--- 103 |||||||||||||||||| |||| ||| ||||||| | | || ||||||||||| Sbjct 2400 GTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAATATTGTCA 2341 Query 104 GCCAGAGACCGATAGCGCACAAGTAGAGTGA 134 || |||||||||||||| ||||||| |||| Sbjct 2340 GCGAGAGACCGATAGCGAACAAGTACCGTGA 2310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2075184861100