Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq194362 329 8e-88 seq186304 329 8e-88 seq180639 329 8e-88 seq180638 329 8e-88 seq25622 98.7 3e-18 seq170396 93.3 1e-16 seq36892 78.8 2e-12 seq153214 75.2 3e-11 >seq194362 Length=24653 Score = 329 bits (364), Expect = 8e-88 Identities = 274/335 (82%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| |||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 19472 TACCAGCAGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGC 19531 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||||||||||||||||||| || |||||| | ||| ||| || Sbjct 19532 TAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGACCGGAAAGTCAGAGGT 19591 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||| ||||| ||||| |||| ||| |||| ||| | || |||| | ||| Sbjct 19592 GAAATCCCAGGGCTCAACCTTGGAACTGCCTTTGAAACTATCGGTCTGGAGTTCGAGAGA 19651 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||||||| |||||| ||||||| ||||||||| |||||||||||| ||| Sbjct 19652 GGTGAGTGGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGG 19711 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| || | |||| | ||||||||| | | |||||||||||||||||||||| Sbjct 19712 CGAAGGCGGCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAG 19771 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||||||||||||| |||||||| Sbjct 19772 GATTAGATACCCTGGTAGTCCACGCCGTAAACGAT 19806 >seq186304 Length=18897 Score = 329 bits (364), Expect = 8e-88 Identities = 274/335 (82%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| |||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 13716 TACCAGCAGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGC 13775 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||||||||||||||||||| || |||||| | ||| ||| || Sbjct 13776 TAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGACCGGAAAGTCAGAGGT 13835 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||| ||||| ||||| |||| ||| |||| ||| | || |||| | ||| Sbjct 13836 GAAATCCCAGGGCTCAACCTTGGAACTGCCTTTGAAACTATCGGTCTGGAGTTCGAGAGA 13895 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||||||| |||||| ||||||| ||||||||| |||||||||||| ||| Sbjct 13896 GGTGAGTGGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGG 13955 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| || | |||| | ||||||||| | | |||||||||||||||||||||| Sbjct 13956 CGAAGGCGGCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAG 14015 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||||||||||||| |||||||| Sbjct 14016 GATTAGATACCCTGGTAGTCCACGCCGTAAACGAT 14050 >seq180639 Length=8005 Score = 329 bits (364), Expect = 8e-88 Identities = 274/335 (82%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| |||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 790 TACCAGCAGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGC 849 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||||||||||||||||||| || |||||| | ||| ||| || Sbjct 850 TAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGACCGGAAAGTCAGAGGT 909 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||| ||||| ||||| |||| ||| |||| ||| | || |||| | ||| Sbjct 910 GAAATCCCAGGGCTCAACCTTGGAACTGCCTTTGAAACTATCGGTCTGGAGTTCGAGAGA 969 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||||||| |||||| ||||||| ||||||||| |||||||||||| ||| Sbjct 970 GGTGAGTGGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGG 1029 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| || | |||| | ||||||||| | | |||||||||||||||||||||| Sbjct 1030 CGAAGGCGGCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAG 1089 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||||||||||||| |||||||| Sbjct 1090 GATTAGATACCCTGGTAGTCCACGCCGTAAACGAT 1124 >seq180638 Length=39462 Score = 329 bits (364), Expect = 8e-88 Identities = 274/335 (82%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| |||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 5182 TACCAGCAGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGC 5123 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||||||||||||||||||| || |||||| | ||| ||| || Sbjct 5122 TAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGACCGGAAAGTCAGAGGT 5063 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||| ||||| ||||| |||| ||| |||| ||| | || |||| | ||| Sbjct 5062 GAAATCCCAGGGCTCAACCTTGGAACTGCCTTTGAAACTATCGGTCTGGAGTTCGAGAGA 5003 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||||||| |||||| ||||||| ||||||||| |||||||||||| ||| Sbjct 5002 GGTGAGTGGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGG 4943 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| || | |||| | ||||||||| | | |||||||||||||||||||||| Sbjct 4942 CGAAGGCGGCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAG 4883 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||||||||||||| |||||||| Sbjct 4882 GATTAGATACCCTGGTAGTCCACGCCGTAAACGAT 4848 >seq25622 Length=127 Score = 98.7 bits (108), Expect = 3e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || | || Sbjct 127 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 68 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 ||| |||| ||| | | |||||| |||||| ||||| ||| || |||| |||| Sbjct 67 AAGAGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 16 >seq170396 Length=96 Score = 93.3 bits (102), Expect = 1e-16 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || | || Sbjct 96 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 37 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCG 98 ||| |||| ||| | | |||||| |||||| ||||| Sbjct 36 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCG 1 >seq36892 Length=83 Score = 78.8 bits (86), Expect = 2e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 262 TAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGT 321 ||| |||||| || | |||| ||||| | |||| |||||||||||||| ||||||||||| Sbjct 76 TAATACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGTAGT 17 Query 322 CCACGCCCTAAACGAT 337 | | ||||| | |||| Sbjct 16 CTATGCCCTGACCGAT 1 >seq153214 Length=127 Score = 75.2 bits (82), Expect = 3e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 262 TAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGT 321 ||| |||||| || | |||| ||||| | |||| |||||||||||||| ||||||| ||| Sbjct 8 TAATACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGAAGT 67 Query 322 CCACGCCCTAAACGAT 337 | | ||||| | |||| Sbjct 68 CTATGCCCTGACCGAT 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1286705080128