Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq194362 158 2e-36 seq186304 158 2e-36 seq180639 158 2e-36 seq180638 158 2e-36 seq157267 95.1 2e-17 seq124507 95.1 2e-17 seq104597 95.1 2e-17 seq102433 82.4 1e-13 seq65398 78.8 1e-12 seq9638 73.4 5e-11 >seq194362 Length=24653 Score = 158 bits (174), Expect = 2e-36 Identities = 186/247 (75%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||||||||| || ||||| ||| ||||| | ||||||| Sbjct 23117 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACGG-CTTCGCAGA 23059 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||||||||||||||||| ||| || | | ||| || | ||| | Sbjct 23058 GCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTTTGTGC--CCCCGACCGATGC-- 23003 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | ||||| | ||| | ||||||| |||| |||||| | |||||||||| | Sbjct 23002 ----TTGCGCACCAATCG-GGC-CTCCTTCTCGCGAACTTACGGAGGTATTTTGCCGAGT 22949 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||||| |||| | | | |||||| |||||||||||| | ||||||||||||||| Sbjct 22948 TCCTTAAATGTGGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGGTT 22889 Query 242 TACGGTA 248 || |||| Sbjct 22888 TAGGGTA 22882 >seq186304 Length=18897 Score = 158 bits (174), Expect = 2e-36 Identities = 186/247 (75%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||||||||| || ||||| ||| ||||| | ||||||| Sbjct 17361 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACGG-CTTCGCAGA 17303 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||||||||||||||||| ||| || | | ||| || | ||| | Sbjct 17302 GCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTTTGTGC--CCCCGACCGATGC-- 17247 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | ||||| | ||| | ||||||| |||| |||||| | |||||||||| | Sbjct 17246 ----TTGCGCACCAATCG-GGC-CTCCTTCTCGCGAACTTACGGAGGTATTTTGCCGAGT 17193 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||||| |||| | | | |||||| |||||||||||| | ||||||||||||||| Sbjct 17192 TCCTTAAATGTGGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGGTT 17133 Query 242 TACGGTA 248 || |||| Sbjct 17132 TAGGGTA 17126 >seq180639 Length=8005 Score = 158 bits (174), Expect = 2e-36 Identities = 186/247 (75%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||||||||| || ||||| ||| ||||| | ||||||| Sbjct 4435 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACGG-CTTCGCAGA 4377 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||||||||||||||||| ||| || | | ||| || | ||| | Sbjct 4376 GCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTTTGTGC--CCCCGACCGATGC-- 4321 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | ||||| | ||| | ||||||| |||| |||||| | |||||||||| | Sbjct 4320 ----TTGCGCACCAATCG-GGC-CTCCTTCTCGCGAACTTACGGAGGTATTTTGCCGAGT 4267 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||||| |||| | | | |||||| |||||||||||| | ||||||||||||||| Sbjct 4266 TCCTTAAATGTGGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGGTT 4207 Query 242 TACGGTA 248 || |||| Sbjct 4206 TAGGGTA 4200 >seq180638 Length=39462 Score = 158 bits (174), Expect = 2e-36 Identities = 186/247 (75%), Gaps = 11/247 (4%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||||||||| || ||||| ||| |||| || ||||||| Sbjct 1537 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTA-CGGCTTCGCAGA 1595 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||||||||||||||||| ||| || | | ||| || | ||| | | Sbjct 1596 GCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTTTGTGC--CCCCGACC-GAT--- 1649 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | ||||| | || | ||||||| |||| |||||| | |||||||||| | Sbjct 1650 --GCTTGCGCACCA--ATCGGGCCTCCTTCTCGCGAACTTACGGAGGTATTTTGCCGAGT 1705 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||||| |||| | | | |||||| |||||||||||| | ||||||||||||||| Sbjct 1706 TCCTTAAATGTGGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGGTT 1765 Query 242 TACGGTA 248 || |||| Sbjct 1766 TAGGGTA 1772 >seq157267 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| || | ||| Sbjct 13 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCGGAGTCCT 71 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 72 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 105 >seq124507 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| || | ||| ||| | ||| Sbjct 23 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTTCAA-CTTAGCAGAGTCCT 81 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 82 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 115 >seq104597 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||| ||||| |||| ||| ||| | ||| Sbjct 95 CTTTCAGCACCGGGCAGGTGTCAGACCCTATTCATCGTTTTACAA-CTTAGCAGAGTCCT 37 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 36 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 3 >seq102433 Length=127 Score = 82.4 bits (90), Expect = 1e-13 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 26 GTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTC 85 ||||| || ||||||||| |||| ||| ||| | |||||||||||||||||||||| Sbjct 126 GTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTC 68 Query 86 GCTTCCCTCTATTCT 100 ||||||||||||||| Sbjct 67 GCTTCCCTCTATTCT 53 >seq65398 Length=77 Score = 78.8 bits (86), Expect = 1e-12 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 26 GTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTC 85 ||||| || ||||||||| |||| ||| ||| | |||||||||||||||||||||| Sbjct 2 GTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTC 60 Query 86 GCTTCCCTCTATTCT 100 ||| ||||||||||| Sbjct 61 GCTACCCTCTATTCT 75 >seq9638 Length=88 Score = 73.4 bits (80), Expect = 5e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| ||| | ||| ||| | ||| Sbjct 76 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTA-CAACTTAGCAGAGTCCT 18 Query 67 GTGTTTTTAGTAAACAG 83 ||||||||||||||||| Sbjct 17 GTGTTTTTAGTAAACAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692889909586