Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq194362 111 1e-22 seq186304 111 1e-22 seq180639 111 1e-22 seq180638 111 1e-22 seq124507 82.4 7e-14 seq157267 73.4 4e-11 seq104597 73.4 4e-11 >seq194362 Length=24653 Score = 111 bits (122), Expect = 1e-22 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| ||||||||||| |||||| || || ||| ||||| Sbjct 23022 ACCAGGGGGTGGCGACTGTTTACTAAAAACACAGGGCTCTGCGAAGCCGTAAGGCGACGT 23081 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 23082 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 23117 >seq186304 Length=18897 Score = 111 bits (122), Expect = 1e-22 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| ||||||||||| |||||| || || ||| ||||| Sbjct 17266 ACCAGGGGGTGGCGACTGTTTACTAAAAACACAGGGCTCTGCGAAGCCGTAAGGCGACGT 17325 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 17326 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 17361 >seq180639 Length=8005 Score = 111 bits (122), Expect = 1e-22 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| ||||||||||| |||||| || || ||| ||||| Sbjct 4340 ACCAGGGGGTGGCGACTGTTTACTAAAAACACAGGGCTCTGCGAAGCCGTAAGGCGACGT 4399 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 4400 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 4435 >seq180638 Length=39462 Score = 111 bits (122), Expect = 1e-22 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| ||||||||||| |||||| || || ||| ||||| Sbjct 1632 ACCAGGGGGTGGCGACTGTTTACTAAAAACACAGGGCTCTGCGAAGCCGTAAGGCGACGT 1573 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 1572 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 1537 >seq124507 Length=127 Score = 82.4 bits (90), Expect = 7e-14 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| ||||||| || |||| || ||||||||| ||| Sbjct 102 GCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTTGAAAAACGATGTATAGGGTCTGA 43 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | |||||||||||| | ||| Sbjct 42 CACCTGCCCGGTGCTGAAAG 23 >seq157267 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| |||| || || | || || ||||||||| ||| Sbjct 92 GCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTGA 33 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | |||||||||||| | ||| Sbjct 32 CACCTGCCCGGTGCTGAAAG 13 >seq104597 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| ||||||| || | || || | ||||||| ||| Sbjct 16 GCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTTGTAAAACGATGAATAGGGTCTGA 75 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | |||||||||||| | ||| Sbjct 76 CACCTGCCCGGTGCTGAAAG 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475763117642