Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq194362 325 1e-86 seq186304 325 1e-86 seq180639 325 1e-86 seq180638 325 1e-86 seq131795 127 5e-27 seq3303 125 2e-26 seq14432 116 9e-24 seq157190 113 1e-22 seq18650 109 1e-21 seq129787 107 5e-21 seq148274 100 7e-19 seq103585 100 7e-19 seq89538 100 7e-19 seq70458 100 7e-19 seq62900 98.7 2e-18 seq62901 96.9 9e-18 seq95567 91.5 4e-16 seq16335 91.5 4e-16 seq20311 84.2 6e-14 seq124507 82.4 2e-13 seq157267 73.4 1e-10 seq104597 73.4 1e-10 >seq194362 Length=24653 Score = 325 bits (360), Expect = 1e-86 Identities = 319/410 (78%), Gaps = 25/410 (6%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||||||||| | ||||||||| ||||||| | ||||||||| | ||| Sbjct 23292 CTGCATCTTCACAGACAGTTCAATTTCGCTGAGTCCACATTTGAGACAGCGGGGAAGTCG 23233 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23232 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 23173 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGA-TCAAGAGCTTCGCGTTAGCTAACCCC 189 ||| ||||||||||||||||||||||||||| | ||||| |||| || ||| | Sbjct 23172 TATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAAG-GCTT-GC--------ACCTC 23123 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | |||||||||||||||||||||||||||| |||||||||||| ||| || || | Sbjct 23122 TCCTTTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACGGCTTCG 23063 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGC 309 ||||| ||||||||||| ||||||||||| | |||||| | | | ||| | || Sbjct 23062 CAGAGCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTTTGTGCCCCCGACCGATGC 23003 Query 310 TTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTT 369 || || |||| | ||| | ||||||| |||| |||||| | ||| Sbjct 23002 TTGCG------------CACC--AATCGGGCCTCCTTCTCGCGAACTTACGGAGGTATTT 22957 Query 370 TGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||| |||||||| |||||||||||||||||||||||||||||| Sbjct 22956 TGCCGAGTTCCTTAAATGTGGTTCTCTCAAGCGCCTTGGTATTCTCTACC 22907 >seq186304 Length=18897 Score = 325 bits (360), Expect = 1e-86 Identities = 319/410 (78%), Gaps = 25/410 (6%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||||||||| | ||||||||| ||||||| | ||||||||| | ||| Sbjct 17536 CTGCATCTTCACAGACAGTTCAATTTCGCTGAGTCCACATTTGAGACAGCGGGGAAGTCG 17477 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17476 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 17417 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGA-TCAAGAGCTTCGCGTTAGCTAACCCC 189 ||| ||||||||||||||||||||||||||| | ||||| |||| || ||| | Sbjct 17416 TATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAAG-GCTT-GC--------ACCTC 17367 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | |||||||||||||||||||||||||||| |||||||||||| ||| || || | Sbjct 17366 TCCTTTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACGGCTTCG 17307 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGC 309 ||||| ||||||||||| ||||||||||| | |||||| | | | ||| | || Sbjct 17306 CAGAGCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTTTGTGCCCCCGACCGATGC 17247 Query 310 TTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTT 369 || || |||| | ||| | ||||||| |||| |||||| | ||| Sbjct 17246 TTGCG------------CACC--AATCGGGCCTCCTTCTCGCGAACTTACGGAGGTATTT 17201 Query 370 TGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||| |||||||| |||||||||||||||||||||||||||||| Sbjct 17200 TGCCGAGTTCCTTAAATGTGGTTCTCTCAAGCGCCTTGGTATTCTCTACC 17151 >seq180639 Length=8005 Score = 325 bits (360), Expect = 1e-86 Identities = 319/410 (78%), Gaps = 25/410 (6%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||||||||| | ||||||||| ||||||| | ||||||||| | ||| Sbjct 4610 CTGCATCTTCACAGACAGTTCAATTTCGCTGAGTCCACATTTGAGACAGCGGGGAAGTCG 4551 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4550 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 4491 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGA-TCAAGAGCTTCGCGTTAGCTAACCCC 189 ||| ||||||||||||||||||||||||||| | ||||| |||| || ||| | Sbjct 4490 TATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAAG-GCTT-GC--------ACCTC 4441 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | |||||||||||||||||||||||||||| |||||||||||| ||| || || | Sbjct 4440 TCCTTTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACGGCTTCG 4381 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGC 309 ||||| ||||||||||| ||||||||||| | |||||| | | | ||| | || Sbjct 4380 CAGAGCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTTTGTGCCCCCGACCGATGC 4321 Query 310 TTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTT 369 || || |||| | ||| | ||||||| |||| |||||| | ||| Sbjct 4320 TTGCG------------CACC--AATCGGGCCTCCTTCTCGCGAACTTACGGAGGTATTT 4275 Query 370 TGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||| |||||||| |||||||||||||||||||||||||||||| Sbjct 4274 TGCCGAGTTCCTTAAATGTGGTTCTCTCAAGCGCCTTGGTATTCTCTACC 4225 >seq180638 Length=39462 Score = 325 bits (360), Expect = 1e-86 Identities = 319/410 (78%), Gaps = 25/410 (6%) Strand=Plus/Plus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||||||||| | ||||||||| ||||||| | ||||||||| | ||| Sbjct 1362 CTGCATCTTCACAGACAGTTCAATTTCGCTGAGTCCACATTTGAGACAGCGGGGAAGTCG 1421 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1422 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 1481 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGA-TCAAGAGCTTCGCGTTAGCTAACCCC 189 ||| ||||||||||||||||||||||||||| | ||||| |||| || ||| | Sbjct 1482 TATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAAG-GCTT-GC--------ACCTC 1531 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | |||||||||||||||||||||||||||| |||||||||||| ||| || || | Sbjct 1532 TCCTTTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACGGCTTCG 1591 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGC 309 ||||| ||||||||||| ||||||||||| | |||||| | | | ||| | || Sbjct 1592 CAGAGCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTTTGTGCCCCCGACCGATGC 1651 Query 310 TTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTT 369 || || |||| | ||| | ||||||| |||| |||||| | ||| Sbjct 1652 TTGCG------------CACC--AATCGGGCCTCCTTCTCGCGAACTTACGGAGGTATTT 1697 Query 370 TGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1698 TGCCGAGTTCCTTAAATGTGGTTCTCTCAAGCGCCTTGGTATTCTCTACC 1747 >seq131795 Length=127 Score = 127 bits (140), Expect = 5e-27 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| |||||| |||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 97 TCGTTACACCATTCATGCAGGTCGGAACTCACCAGACAAGGAATTTCGCTACCTTAGGAC 38 Query 128 CGTTATTGTTACGGCCGCCGTTTAC 152 |||||| ||||| |||||||||||| Sbjct 37 CGTTATGGTTACAGCCGCCGTTTAC 13 >seq3303 Length=127 Score = 125 bits (138), Expect = 2e-26 Identities = 106/128 (83%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 10 ACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGG-TGGAGACAGCGCCGCCAT 68 |||||||||||||||| | || ||||||||| || || ||||||||| | | Sbjct 127 ACTGCATCTTCACAGCAAGTTTAATTTCACT-AGGCTAATACTGGAGACAGTAGGGAAGT 69 Query 69 CGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 128 |||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 68 CGTTTCACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACC 9 Query 129 GTTATTGT 136 ||||| || Sbjct 8 GTTATGGT 1 >seq14432 Length=127 Score = 116 bits (128), Expect = 9e-24 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 2 CCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGG 61 Query 136 TTACGGCCGCCGTTTAC 152 || | |||||||||||| Sbjct 62 TTTCAGCCGCCGTTTAC 78 >seq157190 Length=127 Score = 113 bits (124), Expect = 1e-22 Identities = 98/119 (82%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 6 ATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGG-TGGAGACAGCGCCG 64 ||| |||||||||||||||| | || ||||||||| || || ||||||||| | Sbjct 10 ATATACTGCATCTTCACAGCAAGTTTAATTTCACT-AGGCTAATACTGGAGACAGAAGGG 68 Query 65 CCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 123 ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 69 AAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTA 127 >seq18650 Length=127 Score = 109 bits (120), Expect = 1e-21 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 80 TCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTAC 139 || |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 127 TCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTAC 68 Query 140 GGCCGCCGTTTAC 152 || ||||||||| Sbjct 67 AGCTGCCGTTTAC 55 >seq129787 Length=69 Score = 107 bits (118), Expect = 5e-21 Identities = 65/69 (94%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 TCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGAC 60 Query 128 CGTTATTGT 136 |||||| || Sbjct 61 CGTTATGGT 69 >seq148274 Length=127 Score = 100 bits (110), Expect = 7e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 88 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCG 147 ||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1 GTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCG 60 Query 148 TTT 150 ||| Sbjct 61 TTT 63 >seq103585 Length=65 Score = 100 bits (110), Expect = 7e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 TCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGAC 60 Query 128 CGT 130 ||| Sbjct 61 CGT 63 >seq89538 Length=70 Score = 100 bits (110), Expect = 7e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 8 TCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGAC 67 Query 128 CGT 130 ||| Sbjct 68 CGT 70 >seq70458 Length=67 Score = 100 bits (110), Expect = 7e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 63 TCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGAC 4 Query 128 CGT 130 ||| Sbjct 3 CGT 1 >seq62900 Length=64 Score = 98.7 bits (108), Expect = 2e-18 Identities = 59/62 (95%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 3 CCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGG 62 Query 136 TT 137 || Sbjct 63 TT 64 >seq62901 Length=64 Score = 96.9 bits (106), Expect = 9e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 3 CCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGG 62 Query 136 T 136 | Sbjct 63 T 63 >seq95567 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 98 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTAC 152 |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 125 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTAC 71 >seq16335 Length=69 Score = 91.5 bits (100), Expect = 4e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 98 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTAC 152 |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 3 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTAC 57 >seq20311 Length=78 Score = 84.2 bits (92), Expect = 6e-14 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 102 GACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTAC 152 |||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1 GACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTAC 51 >seq124507 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 200 CTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTG 259 ||| | |||||||||||| |||| ||||||||| || |||| || ||||||| ||| Sbjct 23 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTTCAACTTAGCAGAGTCCTG 82 Query 260 TGTTTTTAATAAACAGTCGC 279 |||||||| ||||||||||| Sbjct 83 TGTTTTTAGTAAACAGTCGC 102 >seq157267 Length=127 Score = 73.4 bits (80), Expect = 1e-10 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 200 CTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTG 259 ||| | |||||||||||| |||| ||||||||| || || | || || |||| ||| Sbjct 13 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCGGAGTCCTG 72 Query 260 TGTTTTTAATAAACAGTCGC 279 |||||||| ||||||||||| Sbjct 73 TGTTTTTAGTAAACAGTCGC 92 >seq104597 Length=127 Score = 73.4 bits (80), Expect = 1e-10 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200 CTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTG 259 ||| | |||||||||||| |||| ||||||| | || || | || ||||||| ||| Sbjct 95 CTTTCAGCACCGGGCAGGTGTCAGACCCTATTCATCGTTTTACAACTTAGCAGAGTCCTG 36 Query 260 TGTTTTTAATAAACAGTCGC 279 |||||||| ||||||||||| Sbjct 35 TGTTTTTAGTAAACAGTCGC 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1257969730944