Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq194362 425 2e-116 seq186304 425 2e-116 seq180639 425 2e-116 seq180638 425 2e-116 seq19661 98.7 3e-18 seq160263 86.0 2e-14 seq22340 80.6 8e-13 >seq194362 Length=24653 Score = 425 bits (470), Expect = 2e-116 Identities = 391/496 (79%), Gaps = 24/496 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 19876 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 19935 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||||||| ||||||||||||| ||||||||| ||| | | Sbjct 19936 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAACCCTTGACATCGCAGGACAGCCC 19995 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| | ||| | | | | | | | | | |||||||| ||||||| ||||||||| Sbjct 19996 GAGAGATCG-GGTCTTCTCGTAAGAGACCTGTG-GACAGGTGCTGCATGGCTGTCGTCAG 20053 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||||| |||||||||| |||||||||||||||| |||||||| Sbjct 20054 CTCGTGTCGTGAGATGTTCGGTTAAGTCCGGCAACGAGCGCAACCCACGTCTTTAGTTGC 20113 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || |||| ||||||||||||||| ||||||| ||| || |||||||||||| ||| Sbjct 20114 CAGCATTCAGTTGGGCACTCTAAAGAAACTGCCGATGATAAGTCGGAGGAAGGTGTGGAT 20173 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| || ||||| |||||| | ||||||||||||||||||||||||| || Sbjct 20174 GACGTCAAGTCCTCATGGCCCTTACGGGTTGGGCTACACACGTGCTACAATGGTGGTGAC 20233 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 | || | |||||| |||| ||||||||||||||| Sbjct 20234 AGTGG---------------------GTTAATCCCCAAAAG-CCATCTCAGTTCGGATTG 20271 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 |||||||||||||| |||||| |||||||||||||||||| || |||||||| | Sbjct 20272 GGGTCTGCAACTCGACCCCATGAAGTTGGAATCGCTAGTAATCGCGGAACAGCATGCCGC 20331 Query 481 GGTGAATACGTTCCCG 496 |||||||||||||||| Sbjct 20332 GGTGAATACGTTCCCG 20347 >seq186304 Length=18897 Score = 425 bits (470), Expect = 2e-116 Identities = 391/496 (79%), Gaps = 24/496 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 14120 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 14179 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||||||| ||||||||||||| ||||||||| ||| | | Sbjct 14180 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAACCCTTGACATCGCAGGACAGCCC 14239 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| | ||| | | | | | | | | | |||||||| ||||||| ||||||||| Sbjct 14240 GAGAGATCG-GGTCTTCTCGTAAGAGACCTGTG-GACAGGTGCTGCATGGCTGTCGTCAG 14297 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||||| |||||||||| |||||||||||||||| |||||||| Sbjct 14298 CTCGTGTCGTGAGATGTTCGGTTAAGTCCGGCAACGAGCGCAACCCACGTCTTTAGTTGC 14357 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || |||| ||||||||||||||| ||||||| ||| || |||||||||||| ||| Sbjct 14358 CAGCATTCAGTTGGGCACTCTAAAGAAACTGCCGATGATAAGTCGGAGGAAGGTGTGGAT 14417 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| || ||||| |||||| | ||||||||||||||||||||||||| || Sbjct 14418 GACGTCAAGTCCTCATGGCCCTTACGGGTTGGGCTACACACGTGCTACAATGGTGGTGAC 14477 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 | || | |||||| |||| ||||||||||||||| Sbjct 14478 AGTGG---------------------GTTAATCCCCAAAAG-CCATCTCAGTTCGGATTG 14515 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 |||||||||||||| |||||| |||||||||||||||||| || |||||||| | Sbjct 14516 GGGTCTGCAACTCGACCCCATGAAGTTGGAATCGCTAGTAATCGCGGAACAGCATGCCGC 14575 Query 481 GGTGAATACGTTCCCG 496 |||||||||||||||| Sbjct 14576 GGTGAATACGTTCCCG 14591 >seq180639 Length=8005 Score = 425 bits (470), Expect = 2e-116 Identities = 391/496 (79%), Gaps = 24/496 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1194 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1253 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||||||| ||||||||||||| ||||||||| ||| | | Sbjct 1254 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAACCCTTGACATCGCAGGACAGCCC 1313 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| | ||| | | | | | | | | | |||||||| ||||||| ||||||||| Sbjct 1314 GAGAGATCG-GGTCTTCTCGTAAGAGACCTGTG-GACAGGTGCTGCATGGCTGTCGTCAG 1371 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||||| |||||||||| |||||||||||||||| |||||||| Sbjct 1372 CTCGTGTCGTGAGATGTTCGGTTAAGTCCGGCAACGAGCGCAACCCACGTCTTTAGTTGC 1431 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || |||| ||||||||||||||| ||||||| ||| || |||||||||||| ||| Sbjct 1432 CAGCATTCAGTTGGGCACTCTAAAGAAACTGCCGATGATAAGTCGGAGGAAGGTGTGGAT 1491 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| || ||||| |||||| | ||||||||||||||||||||||||| || Sbjct 1492 GACGTCAAGTCCTCATGGCCCTTACGGGTTGGGCTACACACGTGCTACAATGGTGGTGAC 1551 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 | || | |||||| |||| ||||||||||||||| Sbjct 1552 AGTGG---------------------GTTAATCCCCAAAAG-CCATCTCAGTTCGGATTG 1589 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 |||||||||||||| |||||| |||||||||||||||||| || |||||||| | Sbjct 1590 GGGTCTGCAACTCGACCCCATGAAGTTGGAATCGCTAGTAATCGCGGAACAGCATGCCGC 1649 Query 481 GGTGAATACGTTCCCG 496 |||||||||||||||| Sbjct 1650 GGTGAATACGTTCCCG 1665 >seq180638 Length=39462 Score = 425 bits (470), Expect = 2e-116 Identities = 391/496 (79%), Gaps = 24/496 (5%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 4778 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 4719 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||||||| ||||||||||||| ||||||||| ||| | | Sbjct 4718 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAACCCTTGACATCGCAGGACAGCCC 4659 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| | ||| | | | | | | | | | |||||||| ||||||| ||||||||| Sbjct 4658 GAGAGATCG-GGTCTTCTCGTAAGAGACCTGTG-GACAGGTGCTGCATGGCTGTCGTCAG 4601 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||||| |||||||||| |||||||||||||||| |||||||| Sbjct 4600 CTCGTGTCGTGAGATGTTCGGTTAAGTCCGGCAACGAGCGCAACCCACGTCTTTAGTTGC 4541 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || |||| ||||||||||||||| ||||||| ||| || |||||||||||| ||| Sbjct 4540 CAGCATTCAGTTGGGCACTCTAAAGAAACTGCCGATGATAAGTCGGAGGAAGGTGTGGAT 4481 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| || ||||| |||||| | ||||||||||||||||||||||||| || Sbjct 4480 GACGTCAAGTCCTCATGGCCCTTACGGGTTGGGCTACACACGTGCTACAATGGTGGTGAC 4421 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 | || | |||||| |||| ||||||||||||||| Sbjct 4420 AGTGG---------------------GTTAATCCCCAAAAG-CCATCTCAGTTCGGATTG 4383 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 |||||||||||||| |||||| |||||||||||||||||| || |||||||| | Sbjct 4382 GGGTCTGCAACTCGACCCCATGAAGTTGGAATCGCTAGTAATCGCGGAACAGCATGCCGC 4323 Query 481 GGTGAATACGTTCCCG 496 |||||||||||||||| Sbjct 4322 GGTGAATACGTTCCCG 4307 >seq19661 Length=127 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 7 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGAAT 66 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 67 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 110 >seq160263 Length=125 Score = 86.0 bits (94), Expect = 2e-14 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||| |||| || Sbjct 12 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCG--GGAGTAT 69 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 70 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 113 >seq22340 Length=127 Score = 80.6 bits (88), Expect = 8e-13 Identities = 92/124 (74%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 329 TTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGC 388 ||||||||||||||| ||||||||| | ||||| | | ||| ||| ||||| | ||| Sbjct 4 TTGGGCTACACACGTACTACAATGGTAATTACAATGTGAAGCAAAAATGCGAGTTTTAGC 63 Query 389 AAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTG 448 ||||| ||| || || ||||| |||| | ||||||| |||| ||||||| | Sbjct 64 AAATCATTAAAAATTAACCTTAGTTCTGATTATTCTCTGCAAGTCGAGAGTATGAAGTAG 123 Query 449 GAAT 452 |||| Sbjct 124 GAAT 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1500623790720