Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq211704 363 3e-98 seq199504 363 3e-98 seq179837 158 2e-36 seq217547 152 9e-35 >seq211704 Length=1210 Score = 363 bits (402), Expect = 3e-98 Identities = 244/275 (89%), Gaps = 13/275 (5%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 912 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 971 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 972 TAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 1031 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1032 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1091 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA-------------GGGACTAA 258 |||||||||||||||| |||||||||| |||||| ||| | |||| Sbjct 1092 TGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAATATAAATAAACGACTCTAA 1151 Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||| |||||| |||||||||| Sbjct 1152 AGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 1186 >seq199504 Length=932 Score = 363 bits (402), Expect = 3e-98 Identities = 244/275 (89%), Gaps = 13/275 (5%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 299 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 240 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 239 TAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 180 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 179 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 120 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA-------------GGGACTAA 258 |||||||||||||||| |||||||||| |||||| ||| | |||| Sbjct 119 TGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAATATAAATAAACGACTCTAA 60 Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||| |||||| |||||||||| Sbjct 59 AGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 25 >seq179837 Length=970 Score = 158 bits (174), Expect = 2e-36 Identities = 107/121 (88%), Gaps = 8/121 (7%) Strand=Plus/Plus Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 770 GGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATC- 828 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 829 -------AAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTG 881 Query 216 G 216 | Sbjct 882 G 882 >seq217547 Length=7428 Score = 152 bits (168), Expect = 9e-35 Identities = 102/113 (90%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 3656 CATCAGTAGGGTAAAACTAACCTGTCTCATGATGGTCTAAACCCAGCTCATGTTCCCTAT 3715 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG 144 ||||||||||||||||||| |||| ||||||||||| | ||||| | ||| Sbjct 3716 TAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTT--GCATGATGGAAAG 3766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852482025792