Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq194362 150 2e-34 seq186304 150 2e-34 seq180639 150 2e-34 seq180638 150 2e-34 seq129787 102 9e-20 seq3303 102 9e-20 seq103585 98.7 1e-18 seq89538 98.7 1e-18 seq70458 98.7 1e-18 seq62901 98.7 1e-18 seq62900 98.7 1e-18 seq131795 96.9 4e-18 seq14432 96.9 4e-18 seq157190 89.7 6e-16 seq18650 87.8 2e-15 seq148274 77.0 4e-12 >seq194362 Length=24653 Score = 150 bits (166), Expect = 2e-34 Identities = 121/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| | |||||| | || |||||||||| || | | ||||||| |||| Sbjct 23320 GGGGTCTTTCCGTCTAACCGCGGGAAGTCTGCATCTTCACAGACAGTTCAATTTCGCTGA 23261 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | ||| ||||||||| ||| ||||||||||||||||||||||||||| Sbjct 23260 GTCCACATTTGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 23201 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 23200 ACAAGGAATTTCGCTACCTTAGGACCGTTA 23171 >seq186304 Length=18897 Score = 150 bits (166), Expect = 2e-34 Identities = 121/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| | |||||| | || |||||||||| || | | ||||||| |||| Sbjct 17564 GGGGTCTTTCCGTCTAACCGCGGGAAGTCTGCATCTTCACAGACAGTTCAATTTCGCTGA 17505 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | ||| ||||||||| ||| ||||||||||||||||||||||||||| Sbjct 17504 GTCCACATTTGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 17445 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 17444 ACAAGGAATTTCGCTACCTTAGGACCGTTA 17415 >seq180639 Length=8005 Score = 150 bits (166), Expect = 2e-34 Identities = 121/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| | |||||| | || |||||||||| || | | ||||||| |||| Sbjct 4638 GGGGTCTTTCCGTCTAACCGCGGGAAGTCTGCATCTTCACAGACAGTTCAATTTCGCTGA 4579 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | ||| ||||||||| ||| ||||||||||||||||||||||||||| Sbjct 4578 GTCCACATTTGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 4519 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 4518 ACAAGGAATTTCGCTACCTTAGGACCGTTA 4489 >seq180638 Length=39462 Score = 150 bits (166), Expect = 2e-34 Identities = 121/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| | |||||| | || |||||||||| || | | ||||||| |||| Sbjct 1334 GGGGTCTTTCCGTCTAACCGCGGGAAGTCTGCATCTTCACAGACAGTTCAATTTCGCTGA 1393 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | ||| ||||||||| ||| ||||||||||||||||||||||||||| Sbjct 1394 GTCCACATTTGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 1453 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 1454 ACAAGGAATTTCGCTACCTTAGGACCGTTA 1483 >seq129787 Length=69 Score = 102 bits (112), Expect = 9e-20 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 5 TACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 64 Query 173 A 173 | Sbjct 65 A 65 >seq3303 Length=127 Score = 102 bits (112), Expect = 9e-20 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 54 GCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNNNNNNT 113 |||||||||| | | | ||||||||| ||| | | ||||||| | Sbjct 124 GCATCTTCACAGCAAGTTTAATTTCACTAGGCTAATACTGGAGACAGTAGGGAAGTCGTT 65 Query 114 ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 64 TCACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 5 >seq103585 Length=65 Score = 98.7 bits (108), Expect = 1e-18 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 5 TACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGT 63 >seq89538 Length=70 Score = 98.7 bits (108), Expect = 1e-18 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 12 TACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGT 70 >seq70458 Length=67 Score = 98.7 bits (108), Expect = 1e-18 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 59 TACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGT 1 >seq62901 Length=64 Score = 98.7 bits (108), Expect = 1e-18 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 115 CACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 CACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 59 >seq62900 Length=64 Score = 98.7 bits (108), Expect = 1e-18 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 115 CACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 CACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 59 >seq131795 Length=127 Score = 96.9 bits (106), Expect = 4e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 93 TACACCATTCATGCAGGTCGGAACTCACCAGACAAGGAATTTCGCTACCTTAGGACCGTT 34 Query 173 A 173 | Sbjct 33 A 33 >seq14432 Length=127 Score = 96.9 bits (106), Expect = 4e-18 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 116 ACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 ACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 58 >seq157190 Length=127 Score = 89.7 bits (98), Expect = 6e-16 Identities = 84/111 (76%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 54 GCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNNNNNNT 113 |||||||||| | | | ||||||||| ||| | | ||||||| | Sbjct 17 GCATCTTCACAGCAAGTTTAATTTCACTAGGCTAATACTGGAGACAGAAGGGAAGTCGTT 76 Query 114 ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 164 ||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 77 ACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTA 127 >seq18650 Length=127 Score = 87.8 bits (96), Expect = 2e-15 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 121 TCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 127 TCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 75 >seq148274 Length=127 Score = 77.0 bits (84), Expect = 4e-12 Identities = 44/45 (98%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 129 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 GTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546010020918