Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq194362 248 2e-63 seq186304 248 2e-63 seq180639 248 2e-63 seq180638 248 2e-63 seq63067 111 3e-22 seq149292 109 1e-21 >seq194362 Length=24653 Score = 248 bits (274), Expect = 2e-63 Identities = 259/337 (77%), Gaps = 20/337 (6%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||| | ||| |||||||||| |||| ||||||| || | ||| Sbjct 19444 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCAT-GGCTAGATCAGGGTTGCCCCC 19387 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 19386 ATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 19327 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||| ||||| || ||||||||| |||||| ||||||||| || Sbjct 19326 TGTGGCTGATCATCCTCTCAAACCAGCTATGGATCGTCGGCTTGGTAGGCCATTACCCCA 19267 Query 181 CCAACTAGCTAATCCGACCTAGGCTCAT-CTGATAGCGCAAGGCCCGA-AGGTCCCCTGC 238 ||||||| ||||||| || |||| || || | |||| | | | Sbjct 19266 CCAACTACCTAATCCAACGCGGGCTGATCCTTCT----------CCGATAAAT------C 19223 Query 239 TTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACC 298 |||| || |||| ||||| |||||||| | |||||| | | ||| || | Sbjct 19222 TTTCCCCAATAGGGCGTATACGGTATTACTCCCAGTTTCCCAGGGCTATTCCGTAGAGAA 19163 Query 299 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 |||| ||||| | || |||||||||||||||||||| Sbjct 19162 GGGCACATTCCCACGCGTTACTCACCCGTCCGCCGCT 19126 >seq186304 Length=18897 Score = 248 bits (274), Expect = 2e-63 Identities = 259/337 (77%), Gaps = 20/337 (6%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||| | ||| |||||||||| |||| ||||||| || | ||| Sbjct 13688 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCAT-GGCTAGATCAGGGTTGCCCCC 13631 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 13630 ATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 13571 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||| ||||| || ||||||||| |||||| ||||||||| || Sbjct 13570 TGTGGCTGATCATCCTCTCAAACCAGCTATGGATCGTCGGCTTGGTAGGCCATTACCCCA 13511 Query 181 CCAACTAGCTAATCCGACCTAGGCTCAT-CTGATAGCGCAAGGCCCGA-AGGTCCCCTGC 238 ||||||| ||||||| || |||| || || | |||| | | | Sbjct 13510 CCAACTACCTAATCCAACGCGGGCTGATCCTTCT----------CCGATAAAT------C 13467 Query 239 TTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACC 298 |||| || |||| ||||| |||||||| | |||||| | | ||| || | Sbjct 13466 TTTCCCCAATAGGGCGTATACGGTATTACTCCCAGTTTCCCAGGGCTATTCCGTAGAGAA 13407 Query 299 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 |||| ||||| | || |||||||||||||||||||| Sbjct 13406 GGGCACATTCCCACGCGTTACTCACCCGTCCGCCGCT 13370 >seq180639 Length=8005 Score = 248 bits (274), Expect = 2e-63 Identities = 259/337 (77%), Gaps = 20/337 (6%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||| | ||| |||||||||| |||| ||||||| || | ||| Sbjct 762 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCAT-GGCTAGATCAGGGTTGCCCCC 705 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 704 ATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 645 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||| ||||| || ||||||||| |||||| ||||||||| || Sbjct 644 TGTGGCTGATCATCCTCTCAAACCAGCTATGGATCGTCGGCTTGGTAGGCCATTACCCCA 585 Query 181 CCAACTAGCTAATCCGACCTAGGCTCAT-CTGATAGCGCAAGGCCCGA-AGGTCCCCTGC 238 ||||||| ||||||| || |||| || || | |||| | | | Sbjct 584 CCAACTACCTAATCCAACGCGGGCTGATCCTTCT----------CCGATAAAT------C 541 Query 239 TTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACC 298 |||| || |||| ||||| |||||||| | |||||| | | ||| || | Sbjct 540 TTTCCCCAATAGGGCGTATACGGTATTACTCCCAGTTTCCCAGGGCTATTCCGTAGAGAA 481 Query 299 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 |||| ||||| | || |||||||||||||||||||| Sbjct 480 GGGCACATTCCCACGCGTTACTCACCCGTCCGCCGCT 444 >seq180638 Length=39462 Score = 248 bits (274), Expect = 2e-63 Identities = 259/337 (77%), Gaps = 20/337 (6%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||| | ||| |||||||||| |||| ||||||| || | ||| Sbjct 5210 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCAT-GGCTAGATCAGGGTTGCCCCC 5267 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 5268 ATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 5327 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||| ||||| || ||||||||| |||||| ||||||||| || Sbjct 5328 TGTGGCTGATCATCCTCTCAAACCAGCTATGGATCGTCGGCTTGGTAGGCCATTACCCCA 5387 Query 181 CCAACTAGCTAATCCGACCTAGGCTCAT-CTGATAGCGCAAGGCCCGA-AGGTCCCCTGC 238 ||||||| ||||||| || |||| || || | |||| | | | Sbjct 5388 CCAACTACCTAATCCAACGCGGGCTGATCCTTCT----------CCGATAAAT------C 5431 Query 239 TTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACC 298 |||| || |||| ||||| |||||||| | |||||| | | ||| || | Sbjct 5432 TTTCCCCAATAGGGCGTATACGGTATTACTCCCAGTTTCCCAGGGCTATTCCGTAGAGAA 5491 Query 299 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 |||| ||||| | || |||||||||||||||||||| Sbjct 5492 GGGCACATTCCCACGCGTTACTCACCCGTCCGCCGCT 5528 >seq63067 Length=124 Score = 111 bits (122), Expect = 3e-22 Identities = 100/123 (81%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 101 || ||||| |||||||||||||||| ||||||| ||||||||||| | ||| || || Sbjct 3 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTT 61 Query 102 GACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCC 161 | |||| | ||||| ||| |||| |||||||| |||||| ||||| || | ||||||| | Sbjct 62 GGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGC 120 Query 162 TTG 164 ||| Sbjct 121 TTG 123 >seq149292 Length=123 Score = 109 bits (120), Expect = 1e-21 Identities = 101/124 (81%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-T 100 || ||||| |||||||||||||||| ||||||| ||||||||||| | ||| || | | Sbjct 123 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTT 65 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 || |||| | ||||| ||| |||| |||||||| |||||| ||||| || | ||||||| Sbjct 64 GGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGG 6 Query 161 CTTG 164 |||| Sbjct 5 CTTG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069593552960