Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq194362 315 2e-83 seq186304 315 2e-83 seq180639 315 2e-83 seq180638 315 2e-83 >seq194362 Length=24653 Score = 315 bits (348), Expect = 2e-83 Identities = 325/411 (79%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||| ||||| ||| | |||||||||| | || ||||||| ||||||||| || |||| Sbjct 22103 CACAAGTCATCCCG--ACCTTTTTCAACAGGTGTGGGTTCGGACCTCCAGTTGGT-GTTA 22047 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 ||||||||| || ||||| ||| | |||||| | ||||| ||||||| | || | Sbjct 22046 CCCAACCTT-CATCCTGCTCAT-GCCTAGATCATCTGGTTT-CGGGTCTGAT-CCGTCTG 21991 Query 130 ACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||| | ||||| ||||||||||||| |||| ||||| | |||| | |||||||| Sbjct 21990 ACTCATGCGCCCATTTAAGACTCGCTTT-CGCTGCGCCTACACCTAACGGCTTAAGCTT- 21933 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 |||| | | |||||| |||||||||||||||||||||||| |||||| ||| | | Sbjct 21932 GCCAGACAGACCAAGTCGTTGACCCATTATACAAAAGGTACGCCGTCACCGCGCAAGGCG 21873 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 | |||| |||||||||| || | ||||||||| | || ||||||||||||| |||||| Sbjct 21872 G-CTCCGACTGCTTGTAGGCGTCCGGTTTCAGAAACTGTTTCACTCCCCTCGTCGGGGTG 21814 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| |||||||||||||||||| |||| ||||||||||| || |||| |||||||| Sbjct 21813 CTTTTCACCTTTCCCTCACGGTACTGGTTCGCTATCGGTCAGCAAGGAGTACTTAGCCTT 21754 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||| ||||||||| || |||||||| |||| |||| ||| |||||| Sbjct 21753 CGAGGGTGGTCCCCCGATCTTCAGACAGGATTTCACGTGTCCCGCCCTACT 21703 >seq186304 Length=18897 Score = 315 bits (348), Expect = 2e-83 Identities = 325/411 (79%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||| ||||| ||| | |||||||||| | || ||||||| ||||||||| || |||| Sbjct 16347 CACAAGTCATCCCG--ACCTTTTTCAACAGGTGTGGGTTCGGACCTCCAGTTGGT-GTTA 16291 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 ||||||||| || ||||| ||| | |||||| | ||||| ||||||| | || | Sbjct 16290 CCCAACCTT-CATCCTGCTCAT-GCCTAGATCATCTGGTTT-CGGGTCTGAT-CCGTCTG 16235 Query 130 ACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||| | ||||| ||||||||||||| |||| ||||| | |||| | |||||||| Sbjct 16234 ACTCATGCGCCCATTTAAGACTCGCTTT-CGCTGCGCCTACACCTAACGGCTTAAGCTT- 16177 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 |||| | | |||||| |||||||||||||||||||||||| |||||| ||| | | Sbjct 16176 GCCAGACAGACCAAGTCGTTGACCCATTATACAAAAGGTACGCCGTCACCGCGCAAGGCG 16117 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 | |||| |||||||||| || | ||||||||| | || ||||||||||||| |||||| Sbjct 16116 G-CTCCGACTGCTTGTAGGCGTCCGGTTTCAGAAACTGTTTCACTCCCCTCGTCGGGGTG 16058 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| |||||||||||||||||| |||| ||||||||||| || |||| |||||||| Sbjct 16057 CTTTTCACCTTTCCCTCACGGTACTGGTTCGCTATCGGTCAGCAAGGAGTACTTAGCCTT 15998 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||| ||||||||| || |||||||| |||| |||| ||| |||||| Sbjct 15997 CGAGGGTGGTCCCCCGATCTTCAGACAGGATTTCACGTGTCCCGCCCTACT 15947 >seq180639 Length=8005 Score = 315 bits (348), Expect = 2e-83 Identities = 325/411 (79%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||| ||||| ||| | |||||||||| | || ||||||| ||||||||| || |||| Sbjct 3421 CACAAGTCATCCCG--ACCTTTTTCAACAGGTGTGGGTTCGGACCTCCAGTTGGT-GTTA 3365 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 ||||||||| || ||||| ||| | |||||| | ||||| ||||||| | || | Sbjct 3364 CCCAACCTT-CATCCTGCTCAT-GCCTAGATCATCTGGTTT-CGGGTCTGAT-CCGTCTG 3309 Query 130 ACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||| | ||||| ||||||||||||| |||| ||||| | |||| | |||||||| Sbjct 3308 ACTCATGCGCCCATTTAAGACTCGCTTT-CGCTGCGCCTACACCTAACGGCTTAAGCTT- 3251 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 |||| | | |||||| |||||||||||||||||||||||| |||||| ||| | | Sbjct 3250 GCCAGACAGACCAAGTCGTTGACCCATTATACAAAAGGTACGCCGTCACCGCGCAAGGCG 3191 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 | |||| |||||||||| || | ||||||||| | || ||||||||||||| |||||| Sbjct 3190 G-CTCCGACTGCTTGTAGGCGTCCGGTTTCAGAAACTGTTTCACTCCCCTCGTCGGGGTG 3132 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| |||||||||||||||||| |||| ||||||||||| || |||| |||||||| Sbjct 3131 CTTTTCACCTTTCCCTCACGGTACTGGTTCGCTATCGGTCAGCAAGGAGTACTTAGCCTT 3072 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||| ||||||||| || |||||||| |||| |||| ||| |||||| Sbjct 3071 CGAGGGTGGTCCCCCGATCTTCAGACAGGATTTCACGTGTCCCGCCCTACT 3021 >seq180638 Length=39462 Score = 315 bits (348), Expect = 2e-83 Identities = 325/411 (79%), Gaps = 12/411 (3%) Strand=Plus/Plus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||| ||||| ||| | |||||||||| | || ||||||| ||||||||| || |||| Sbjct 2551 CACAAGTCATCCCG--ACCTTTTTCAACAGGTGTGGGTTCGGACCTCCAGTTGGT-GTTA 2607 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 ||||||||| || ||||| ||| | |||||| | ||||| ||||||| | || | Sbjct 2608 CCCAACCTT-CATCCTGCTCAT-GCCTAGATCATCTGGTTT-CGGGTCTGAT-CCGTCTG 2663 Query 130 ACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||| | ||||| ||||||||||||| |||| ||||| | |||| | |||||||| Sbjct 2664 ACTCATGCGCCCATTTAAGACTCGCTTT-CGCTGCGCCTACACCTAACGGCTTAAGCTT- 2721 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 |||| | | |||||| |||||||||||||||||||||||| |||||| ||| | | Sbjct 2722 GCCAGACAGACCAAGTCGTTGACCCATTATACAAAAGGTACGCCGTCACCGCGCAAGGCG 2781 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 | |||| |||||||||| || | ||||||||| | || ||||||||||||| |||||| Sbjct 2782 G-CTCCGACTGCTTGTAGGCGTCCGGTTTCAGAAACTGTTTCACTCCCCTCGTCGGGGTG 2840 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| |||||||||||||||||| |||| ||||||||||| || |||| |||||||| Sbjct 2841 CTTTTCACCTTTCCCTCACGGTACTGGTTCGCTATCGGTCAGCAAGGAGTACTTAGCCTT 2900 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||| ||||||||| || |||||||| |||| |||| ||| |||||| Sbjct 2901 CGAGGGTGGTCCCCCGATCTTCAGACAGGATTTCACGTGTCCCGCCCTACT 2951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1238812831488