Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq194362 208 2e-51 seq186304 208 2e-51 seq180639 208 2e-51 seq180638 208 2e-51 seq63067 91.5 3e-16 seq149292 89.7 1e-15 >seq194362 Length=24653 Score = 208 bits (230), Expect = 2e-51 Identities = 162/193 (84%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||||| |||||||||| || || ||||||||||||||||||||| Sbjct 19412 GGCATGGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAG 19353 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| ||||||| || |||| ||| Sbjct 19352 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAAACCAGCTATGGAT 19293 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 |||||||||||| ||| |||| | |||||||||||||||| |||| || ||| ||| Sbjct 19292 CGTCGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCCAACGCGGGCTGATCCTTCT 19233 Query 181 GCGATAAATCTTT 193 |||||||||||| Sbjct 19232 CCGATAAATCTTT 19220 >seq186304 Length=18897 Score = 208 bits (230), Expect = 2e-51 Identities = 162/193 (84%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||||| |||||||||| || || ||||||||||||||||||||| Sbjct 13656 GGCATGGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAG 13597 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| ||||||| || |||| ||| Sbjct 13596 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAAACCAGCTATGGAT 13537 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 |||||||||||| ||| |||| | |||||||||||||||| |||| || ||| ||| Sbjct 13536 CGTCGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCCAACGCGGGCTGATCCTTCT 13477 Query 181 GCGATAAATCTTT 193 |||||||||||| Sbjct 13476 CCGATAAATCTTT 13464 >seq180639 Length=8005 Score = 208 bits (230), Expect = 2e-51 Identities = 162/193 (84%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||||| |||||||||| || || ||||||||||||||||||||| Sbjct 730 GGCATGGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAG 671 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| ||||||| || |||| ||| Sbjct 670 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAAACCAGCTATGGAT 611 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 |||||||||||| ||| |||| | |||||||||||||||| |||| || ||| ||| Sbjct 610 CGTCGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCCAACGCGGGCTGATCCTTCT 551 Query 181 GCGATAAATCTTT 193 |||||||||||| Sbjct 550 CCGATAAATCTTT 538 >seq180638 Length=39462 Score = 208 bits (230), Expect = 2e-51 Identities = 162/193 (84%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||||| |||||||||| || || ||||||||||||||||||||| Sbjct 5242 GGCATGGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAG 5301 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| ||||||| || |||| ||| Sbjct 5302 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAAACCAGCTATGGAT 5361 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 |||||||||||| ||| |||| | |||||||||||||||| |||| || ||| ||| Sbjct 5362 CGTCGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCCAACGCGGGCTGATCCTTCT 5421 Query 181 GCGATAAATCTTT 193 |||||||||||| Sbjct 5422 CCGATAAATCTTT 5434 >seq63067 Length=124 Score = 91.5 bits (100), Expect = 3e-16 Identities = 93/119 (78%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCC 71 |||| | |||| |||||||| ||||| | ||||||||||| | ||| || || |||| Sbjct 7 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGCC 65 Query 72 GTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 || | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 66 GTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 123 >seq149292 Length=123 Score = 89.7 bits (98), Expect = 1e-15 Identities = 94/120 (78%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | ||| || || |||| Sbjct 119 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGC 61 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 60 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 996158771712