Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq193490 125 2e-26 >seq193490 Length=8433 Score = 125 bits (138), Expect = 2e-26 Identities = 263/386 (68%), Gaps = 12/386 (3%) Strand=Plus/Plus Query 15 TCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTTGATCCTGCTGCTCG 74 |||||||| ||||| ||||| ||||| || || ||| ||||| ||||| | || ||| Sbjct 1793 TCGCCGCCGACCTGAGTCCAGGCCAGACCCGTCACCACGCCGACCTGATCGTCCTTTTCG 1852 Query 75 GCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGGAGTCGGCCGTGACC 134 |||||||| || | | |||||||| ||| | | ||| |||| ||| || Sbjct 1853 GCCAGGCCATAACGGTGGCGACGCACGCCCAGGTATTCCTCGGCCTTCTCGGGCGTCACT 1912 Query 135 TTCACCGAGAAGCGTTTTTCCAGC-GCATGTTCCTTGACCGCCTTGCGGCAGATCTTCGC 193 | || || || || | | || | | | |||||||||||| || |||||| Sbjct 1913 TCGACGGACTTCACCTTGCCCTTCAGGATCT-CGGTCACCGCCTTGCGGGCGAGCTTCGC 1971 Query 194 GATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGCGGACGAT----GT 249 ||| | |||||||| ||||| |||||||| || ||||| ||||||| | || Sbjct 1972 GATTTCCCGCTCCAGCGAGCGCACCCCGGCTTCCCGCGTGTAATAGCGGATCACATGGGT 2031 Query 250 C-GCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATC 308 | ||| |||| ||| | | | || |||||||| ||||||||| |||| ||| Sbjct 2032 CAGCGCCTCGT-CCGTCACCGA----GAATTCGCCCTTGCGCAGGCCATTCGCCGCGATC 2086 Query 309 TGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGC 368 ||||||||| |||| || | ||||| | | ||| ||||| |||||||| || | | Sbjct 2087 TGCTTGGGCAGCAGGTGCTGGCGCGCGATCTCGCGCTTTTCGTCCTCGGTGTAGCCGGCC 2146 Query 369 AGGCGAATCACTTCCATCCGGTCCAG 394 || || | |||||||||||||| Sbjct 2147 AGAGAGATGATCTCCATCCGGTCCAG 2172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1155799600512