Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq194362 163 7e-38 seq186304 163 7e-38 seq180639 163 7e-38 seq180638 163 7e-38 seq211599 82.4 2e-13 >seq194362 Length=24653 Score = 163 bits (180), Expect = 7e-38 Identities = 157/199 (79%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGA--- 263 ||| ||||||||| | ||| ||||||| ||||| ||| ||| | | ||||| Sbjct 22501 CCAAAGCTTCGGCTCGTGGCTTGAGCCCCGTTACATCTTCGCCGCAAGACCTCTTGATTA 22442 Query 264 --CCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 |||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||| Sbjct 22441 GACCAGTGAGCTGTTACGCTATCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTT 22382 Query 322 GTCTACGCAACTC-CACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGA 380 || | | || || ||||| |||||||||| || ||| | || ||||||||||||| || Sbjct 22381 GTTTTGG-AAGTCTCACATGCTTTCCCACTTAGCCACGAATTGGGGGCCTTAGCTGTTGG 22323 Query 381 TCTGGGCTGTTTCCCTCTC 399 || ||| |||||||||||| Sbjct 22322 TCAGGGTTGTTTCCCTCTC 22304 Score = 87.8 bits (96), Expect = 4e-15 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | |||| | ||| | Sbjct 22762 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTTACCCTGCTCAGATTAGCTTTAAG 22703 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| ||| || ||||| || ||||||||||| | Sbjct 22702 CAGGAACCCTTGGACTTTCGGCGACAGGGTCTCTCACCCTGTTTGTCGCTACTCATGTCA 22643 Query 120 GCATTCTCAC-TCGCATCAACTCCACC 145 ||||||| | || ||| |||||||| Sbjct 22642 ACATTCTCGCTTCTGATC-ACTCCACC 22617 >seq186304 Length=18897 Score = 163 bits (180), Expect = 7e-38 Identities = 157/199 (79%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGA--- 263 ||| ||||||||| | ||| ||||||| ||||| ||| ||| | | ||||| Sbjct 16745 CCAAAGCTTCGGCTCGTGGCTTGAGCCCCGTTACATCTTCGCCGCAAGACCTCTTGATTA 16686 Query 264 --CCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 |||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||| Sbjct 16685 GACCAGTGAGCTGTTACGCTATCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTT 16626 Query 322 GTCTACGCAACTC-CACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGA 380 || | | || || ||||| |||||||||| || ||| | || ||||||||||||| || Sbjct 16625 GTTTTGG-AAGTCTCACATGCTTTCCCACTTAGCCACGAATTGGGGGCCTTAGCTGTTGG 16567 Query 381 TCTGGGCTGTTTCCCTCTC 399 || ||| |||||||||||| Sbjct 16566 TCAGGGTTGTTTCCCTCTC 16548 Score = 87.8 bits (96), Expect = 4e-15 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | |||| | ||| | Sbjct 17006 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTTACCCTGCTCAGATTAGCTTTAAG 16947 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| ||| || ||||| || ||||||||||| | Sbjct 16946 CAGGAACCCTTGGACTTTCGGCGACAGGGTCTCTCACCCTGTTTGTCGCTACTCATGTCA 16887 Query 120 GCATTCTCAC-TCGCATCAACTCCACC 145 ||||||| | || ||| |||||||| Sbjct 16886 ACATTCTCGCTTCTGATC-ACTCCACC 16861 >seq180639 Length=8005 Score = 163 bits (180), Expect = 7e-38 Identities = 157/199 (79%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGA--- 263 ||| ||||||||| | ||| ||||||| ||||| ||| ||| | | ||||| Sbjct 3819 CCAAAGCTTCGGCTCGTGGCTTGAGCCCCGTTACATCTTCGCCGCAAGACCTCTTGATTA 3760 Query 264 --CCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 |||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||| Sbjct 3759 GACCAGTGAGCTGTTACGCTATCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTT 3700 Query 322 GTCTACGCAACTC-CACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGA 380 || | | || || ||||| |||||||||| || ||| | || ||||||||||||| || Sbjct 3699 GTTTTGG-AAGTCTCACATGCTTTCCCACTTAGCCACGAATTGGGGGCCTTAGCTGTTGG 3641 Query 381 TCTGGGCTGTTTCCCTCTC 399 || ||| |||||||||||| Sbjct 3640 TCAGGGTTGTTTCCCTCTC 3622 Score = 87.8 bits (96), Expect = 4e-15 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | |||| | ||| | Sbjct 4080 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTTACCCTGCTCAGATTAGCTTTAAG 4021 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| ||| || ||||| || ||||||||||| | Sbjct 4020 CAGGAACCCTTGGACTTTCGGCGACAGGGTCTCTCACCCTGTTTGTCGCTACTCATGTCA 3961 Query 120 GCATTCTCAC-TCGCATCAACTCCACC 145 ||||||| | || ||| |||||||| Sbjct 3960 ACATTCTCGCTTCTGATC-ACTCCACC 3935 >seq180638 Length=39462 Score = 163 bits (180), Expect = 7e-38 Identities = 157/199 (79%), Gaps = 7/199 (4%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGA--- 263 ||| ||||||||| | ||| ||||||| ||||| ||| ||| | | ||||| Sbjct 2153 CCAAAGCTTCGGCTCGTGGCTTGAGCCCCGTTACATCTTCGCCGCAAGACCTCTTGATTA 2212 Query 264 --CCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 |||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||| Sbjct 2213 GACCAGTGAGCTGTTACGCTATCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTT 2272 Query 322 GTCTACGCAACTC-CACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGA 380 || | | || || ||||| |||||||||| || ||| | || ||||||||||||| || Sbjct 2273 GT-TTTGGAAGTCTCACATGCTTTCCCACTTAGCCACGAATTGGGGGCCTTAGCTGTTGG 2331 Query 381 TCTGGGCTGTTTCCCTCTC 399 || ||| |||||||||||| Sbjct 2332 TCAGGGTTGTTTCCCTCTC 2350 Score = 87.8 bits (96), Expect = 4e-15 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | |||| | ||| | Sbjct 1892 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTTACCCTGCTCAGATTAGCTTTAAG 1951 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| ||| || ||||| || ||||||||||| | Sbjct 1952 CAGGAACCCTTGGACTTTCGGCGACAGGGTCTCTCACCCTGTTTGTCGCTACTCATGTCA 2011 Query 120 GCATTCTCAC-TCGCATCAACTCCACC 145 ||||||| | || ||| |||||||| Sbjct 2012 ACATTCTCGCTTCTGATC-ACTCCACC 2037 >seq211599 Length=1077 Score = 82.4 bits (90), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||| |||||| ||||| ||||||||||||||| ||||||||||||| |||| | Sbjct 452 AGTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTAATTGT-T 510 Query 326 ACGCAACTCCACATCCTTTC--CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCT 383 | ||| || |||| |||| | | | ||| || | ||||||||| ||| Sbjct 511 ATAACACTTTGAATTATTTCATACACTTAATTA-TTTTTATGGACTTTAGCTGATATTCT 569 Query 384 GGGCTGTTTCCCT 396 ||||||||||||| Sbjct 570 GGGCTGTTTCCCT 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174956499968