Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq194362 122 6e-26 seq186304 122 6e-26 seq180639 122 6e-26 seq180638 122 6e-26 >seq194362 Length=24653 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||| || Sbjct 23693 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACTCGGGACCACCGGATCACTATGGCCGA 23634 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||| ||| ||| || ||| |||||||||||| Sbjct 23633 CTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCTGGCTTCTGCCATTGCACTCA 23574 Query 121 CACTA-CGATTTCCGACCG 138 || | ||||||||||||| Sbjct 23573 -ACGAGCGATTTCCGACCG 23556 >seq186304 Length=18897 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||| || Sbjct 17937 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACTCGGGACCACCGGATCACTATGGCCGA 17878 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||| ||| ||| || ||| |||||||||||| Sbjct 17877 CTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCTGGCTTCTGCCATTGCACTCA 17818 Query 121 CACTA-CGATTTCCGACCG 138 || | ||||||||||||| Sbjct 17817 -ACGAGCGATTTCCGACCG 17800 >seq180639 Length=8005 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||| || Sbjct 5011 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACTCGGGACCACCGGATCACTATGGCCGA 4952 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||| ||| ||| || ||| |||||||||||| Sbjct 4951 CTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCTGGCTTCTGCCATTGCACTCA 4892 Query 121 CACTA-CGATTTCCGACCG 138 || | ||||||||||||| Sbjct 4891 -ACGAGCGATTTCCGACCG 4874 >seq180638 Length=39462 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||| || Sbjct 961 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACTCGGGACCACCGGATCACTATGGCCGA 1020 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||| ||| ||| || ||| |||||||||||| Sbjct 1021 CTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCTGGCTTCTGCCATTGCACT-C 1079 Query 121 CACTA-CGATTTCCGACCG 138 || | ||||||||||||| Sbjct 1080 AACGAGCGATTTCCGACCG 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351259209400