Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq194362 297 3e-78 seq186304 297 3e-78 seq180639 297 3e-78 seq180638 297 3e-78 seq154172 120 5e-25 seq137184 114 2e-23 seq53633 114 2e-23 seq61968 89.7 8e-16 seq77898 82.4 1e-13 >seq194362 Length=24653 Score = 297 bits (328), Expect = 3e-78 Identities = 230/274 (84%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||||||||||| |||||| ||| | ||||| ||||| Sbjct 24028 GAGGGGGGCTTCACGCTTAGATGCCTTCAGCGTTTATCCTGTCCGTTCATAGCTACCCAG 23969 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||||| ||||||||| |||||| || || || |||||||||||||||| Sbjct 23968 CACTGCCGTTGGCACGACAACTGGTCCACCAGTGGAACGTTCACCCCGGTCCTCTCGTAC 23909 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || || || |||||||||| | |||||| |||||| | |||||||||||||||||||| | Sbjct 23908 TAGGGGCAACTCCTCTCAAGTATCCTACACCCACGGCAGATAGGGACCGAACTGTCTCAC 23849 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| ||||||||| ||||||||||| |||||||||||| Sbjct 23848 GACGTTCTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACC 23789 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||||||||||||||| |||||||||||| Sbjct 23788 TGCTCCAGCCCCAGGATGAGATGAGCCGACATCG 23755 >seq186304 Length=18897 Score = 297 bits (328), Expect = 3e-78 Identities = 230/274 (84%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||||||||||| |||||| ||| | ||||| ||||| Sbjct 18272 GAGGGGGGCTTCACGCTTAGATGCCTTCAGCGTTTATCCTGTCCGTTCATAGCTACCCAG 18213 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||||| ||||||||| |||||| || || || |||||||||||||||| Sbjct 18212 CACTGCCGTTGGCACGACAACTGGTCCACCAGTGGAACGTTCACCCCGGTCCTCTCGTAC 18153 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || || || |||||||||| | |||||| |||||| | |||||||||||||||||||| | Sbjct 18152 TAGGGGCAACTCCTCTCAAGTATCCTACACCCACGGCAGATAGGGACCGAACTGTCTCAC 18093 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| ||||||||| ||||||||||| |||||||||||| Sbjct 18092 GACGTTCTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACC 18033 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||||||||||||||| |||||||||||| Sbjct 18032 TGCTCCAGCCCCAGGATGAGATGAGCCGACATCG 17999 >seq180639 Length=8005 Score = 297 bits (328), Expect = 3e-78 Identities = 230/274 (84%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||||||||||| |||||| ||| | ||||| ||||| Sbjct 5346 GAGGGGGGCTTCACGCTTAGATGCCTTCAGCGTTTATCCTGTCCGTTCATAGCTACCCAG 5287 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||||| ||||||||| |||||| || || || |||||||||||||||| Sbjct 5286 CACTGCCGTTGGCACGACAACTGGTCCACCAGTGGAACGTTCACCCCGGTCCTCTCGTAC 5227 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || || || |||||||||| | |||||| |||||| | |||||||||||||||||||| | Sbjct 5226 TAGGGGCAACTCCTCTCAAGTATCCTACACCCACGGCAGATAGGGACCGAACTGTCTCAC 5167 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| ||||||||| ||||||||||| |||||||||||| Sbjct 5166 GACGTTCTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACC 5107 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||||||||||||||| |||||||||||| Sbjct 5106 TGCTCCAGCCCCAGGATGAGATGAGCCGACATCG 5073 >seq180638 Length=39462 Score = 297 bits (328), Expect = 3e-78 Identities = 230/274 (84%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||||||||||| |||||| ||| | ||||| ||||| Sbjct 626 GAGGGGGGCTTCACGCTTAGATGCCTTCAGCGTTTATCCTGTCCGTTCATAGCTACCCAG 685 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||||| ||||||||| |||||| || || || |||||||||||||||| Sbjct 686 CACTGCCGTTGGCACGACAACTGGTCCACCAGTGGAACGTTCACCCCGGTCCTCTCGTAC 745 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || || || |||||||||| | |||||| |||||| | |||||||||||||||||||| | Sbjct 746 TAGGGGCAACTCCTCTCAAGTATCCTACACCCACGGCAGATAGGGACCGAACTGTCTCAC 805 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| ||||||||| ||||||||||| |||||||||||| Sbjct 806 GACGTTCTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACC 865 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||||||||||||||| |||||||||||| Sbjct 866 TGCTCCAGCCCCAGGATGAGATGAGCCGACATCG 899 >seq154172 Length=127 Score = 120 bits (132), Expect = 5e-25 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| |||||||||| Sbjct 127 ACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGC 68 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | | ||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 67 CTACCCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 19 >seq137184 Length=127 Score = 114 bits (126), Expect = 2e-23 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 |||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| | Sbjct 127 GAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTA 68 Query 230 ACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||| ||| || |||| |||||||| || ||| |||||||| Sbjct 67 ACCATTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 22 >seq53633 Length=127 Score = 114 bits (126), Expect = 2e-23 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||| | ||| ||| || ||||||| Sbjct 25 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCAAACTCACGTACCACTTTAAT 84 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGAT 258 ||||||||||| ||||||||| ||| || |||| ||||||| Sbjct 85 AGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGAT 127 >seq61968 Length=98 Score = 89.7 bits (98), Expect = 8e-16 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 74 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 15 Query 216 GGGCGAACAGCC 227 ||||||||||| Sbjct 14 AGGCGAACAGCC 3 >seq77898 Length=80 Score = 82.4 bits (90), Expect = 1e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 198 CTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGA 257 ||| ||| || ||||||| ||||||||||| ||||||||| ||| || |||| |||||| Sbjct 78 CTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGA 19 Query 258 TGAGACGAGCCGACATCG 275 || || ||| |||||||| Sbjct 18 TGTGATGAGTCGACATCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779102018152