Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq194362 358 2e-96 seq186304 358 2e-96 seq180639 358 2e-96 seq180638 358 2e-96 seq25622 116 1e-23 seq170396 95.1 4e-17 seq149292 84.2 7e-14 seq63067 82.4 2e-13 seq68885 80.6 8e-13 seq33728 78.8 3e-12 >seq194362 Length=24653 Score = 358 bits (396), Expect = 2e-96 Identities = 284/340 (84%), Gaps = 1/340 (0%) Strand=Plus/Plus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 ||||| ||||||| |||||| |||||||| ||||| ||| ||||||| |||||||| Sbjct 19236 AGGATCAGCCCGCGTTGGATTAGGTAGTTGGTGGGGTAATGGCCTACCAAGCCGACGATC 19295 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 |||| | ||||||| ||||| |||||| ||| |||||||||||| ||| ||||||| Sbjct 19296 CATAGCTGGTTTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTA 19355 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 ||||||||||||||||||||| || |||||||| || |||||| ||| | |||||| Sbjct 19356 CGGGAGGCAGCAGTGGGGAATCTTAGACAATGGGGGCAACCCTGATCTAGCCATGCCGCG 19415 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACT 389 |||| |||||||||||| |||| |||||||||| || | |||||||||||||||||| Sbjct 19416 TGAGTGATGAAGGCCTTAGGGTTGTAAAGCTCTTTCAGCTGGGAAGATAATGACGGTACC 19475 Query 390 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 449 | || |||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 19476 AGCAGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGCTAGC 19535 Query 450 GTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 ||| | |||||||||| |||||||||| | |||||| || Sbjct 19536 GTTGTTCGGAATTACT-GGGCGTAAAGCGCACGTAGGCGG 19574 >seq186304 Length=18897 Score = 358 bits (396), Expect = 2e-96 Identities = 284/340 (84%), Gaps = 1/340 (0%) Strand=Plus/Plus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 ||||| ||||||| |||||| |||||||| ||||| ||| ||||||| |||||||| Sbjct 13480 AGGATCAGCCCGCGTTGGATTAGGTAGTTGGTGGGGTAATGGCCTACCAAGCCGACGATC 13539 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 |||| | ||||||| ||||| |||||| ||| |||||||||||| ||| ||||||| Sbjct 13540 CATAGCTGGTTTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTA 13599 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 ||||||||||||||||||||| || |||||||| || |||||| ||| | |||||| Sbjct 13600 CGGGAGGCAGCAGTGGGGAATCTTAGACAATGGGGGCAACCCTGATCTAGCCATGCCGCG 13659 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACT 389 |||| |||||||||||| |||| |||||||||| || | |||||||||||||||||| Sbjct 13660 TGAGTGATGAAGGCCTTAGGGTTGTAAAGCTCTTTCAGCTGGGAAGATAATGACGGTACC 13719 Query 390 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 449 | || |||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 13720 AGCAGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGCTAGC 13779 Query 450 GTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 ||| | |||||||||| |||||||||| | |||||| || Sbjct 13780 GTTGTTCGGAATTACT-GGGCGTAAAGCGCACGTAGGCGG 13818 >seq180639 Length=8005 Score = 358 bits (396), Expect = 2e-96 Identities = 284/340 (84%), Gaps = 1/340 (0%) Strand=Plus/Plus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 ||||| ||||||| |||||| |||||||| ||||| ||| ||||||| |||||||| Sbjct 554 AGGATCAGCCCGCGTTGGATTAGGTAGTTGGTGGGGTAATGGCCTACCAAGCCGACGATC 613 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 |||| | ||||||| ||||| |||||| ||| |||||||||||| ||| ||||||| Sbjct 614 CATAGCTGGTTTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTA 673 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 ||||||||||||||||||||| || |||||||| || |||||| ||| | |||||| Sbjct 674 CGGGAGGCAGCAGTGGGGAATCTTAGACAATGGGGGCAACCCTGATCTAGCCATGCCGCG 733 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACT 389 |||| |||||||||||| |||| |||||||||| || | |||||||||||||||||| Sbjct 734 TGAGTGATGAAGGCCTTAGGGTTGTAAAGCTCTTTCAGCTGGGAAGATAATGACGGTACC 793 Query 390 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 449 | || |||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 794 AGCAGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGCTAGC 853 Query 450 GTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 ||| | |||||||||| |||||||||| | |||||| || Sbjct 854 GTTGTTCGGAATTACT-GGGCGTAAAGCGCACGTAGGCGG 892 >seq180638 Length=39462 Score = 358 bits (396), Expect = 2e-96 Identities = 284/340 (84%), Gaps = 1/340 (0%) Strand=Plus/Minus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 ||||| ||||||| |||||| |||||||| ||||| ||| ||||||| |||||||| Sbjct 5418 AGGATCAGCCCGCGTTGGATTAGGTAGTTGGTGGGGTAATGGCCTACCAAGCCGACGATC 5359 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 |||| | ||||||| ||||| |||||| ||| |||||||||||| ||| ||||||| Sbjct 5358 CATAGCTGGTTTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTA 5299 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 ||||||||||||||||||||| || |||||||| || |||||| ||| | |||||| Sbjct 5298 CGGGAGGCAGCAGTGGGGAATCTTAGACAATGGGGGCAACCCTGATCTAGCCATGCCGCG 5239 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACT 389 |||| |||||||||||| |||| |||||||||| || | |||||||||||||||||| Sbjct 5238 TGAGTGATGAAGGCCTTAGGGTTGTAAAGCTCTTTCAGCTGGGAAGATAATGACGGTACC 5179 Query 390 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 449 | || |||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 5178 AGCAGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGCTAGC 5119 Query 450 GTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 ||| | |||||||||| |||||||||| | |||||| || Sbjct 5118 GTTGTTCGGAATTACT-GGGCGTAAAGCGCACGTAGGCGG 5080 >seq25622 Length=127 Score = 116 bits (128), Expect = 1e-23 Identities = 95/114 (83%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 386 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 445 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 127 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 68 Query 446 TAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 || ||||| || | | ||| ||| ||||||||||||||||||| || |||||| Sbjct 67 AAGAGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 15 >seq170396 Length=96 Score = 95.1 bits (104), Expect = 4e-17 Identities = 80/97 (82%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 386 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 445 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 96 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 37 Query 446 TAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCG 482 || ||||| || | | ||| ||| |||||||||||| Sbjct 36 AAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCG 1 >seq149292 Length=123 Score = 84.2 bits (92), Expect = 7e-14 Identities = 93/120 (78%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 197 CAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACG 256 |||| ||||||| |||| | |||||| ||||| |||||||||| ||||| | ||| Sbjct 2 CAAGCCGACGATGCTTAGCTGGTTTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACG 60 Query 257 GTCCAAA-CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGAT 315 | |||| || ||| | ||||||||||| ||||||| ||||||||| ||||| |||| Sbjct 61 GCCCAAGTCTTCTAAAAG-GGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGAT 119 >seq63067 Length=124 Score = 82.4 bits (90), Expect = 2e-13 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 197 CAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACG 256 |||| ||||||| |||| | |||||| ||||| |||||||||| ||||| | ||| Sbjct 123 CAAGCCGACGATGCTTAGCTGGTTTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACG 65 Query 257 GTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGAT 315 | | | || ||| | ||||||||||| ||||||| ||||||||| ||||| |||| Sbjct 64 GCCAAGTCTTCTAAAAG-GGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGAT 7 >seq68885 Length=83 Score = 80.6 bits (88), Expect = 8e-13 Identities = 67/81 (83%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 419 CAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGG 478 |||||| |||||||||||| || |||| || ||||| || | | ||| ||| |||||||| Sbjct 1 CAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTAAAGGG 59 Query 479 TGCGTAGGTGGTTTCTTAAGT 499 |||| |||||| || |||||| Sbjct 60 TGCGAAGGTGGCTTGTTAAGT 80 >seq33728 Length=97 Score = 78.8 bits (86), Expect = 3e-12 Identities = 77/97 (79%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 355 AAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTAAC 411 ||| ||| | || ||||||| |||||| | |||||||| | ||||||| | ||||| Sbjct 97 AAAACTCGTTTCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGAAGCCCTGACTAAC 38 Query 412 TACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAG 448 | ||||||||||| |||||||||||| || |||| || Sbjct 37 TTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1494238157568