Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq194362 412 8e-113 seq186304 412 8e-113 seq180639 412 8e-113 seq180638 412 8e-113 seq25622 123 6e-26 seq170396 102 2e-19 seq153214 86.0 2e-14 seq68885 86.0 2e-14 seq36892 80.6 6e-13 seq49591 73.4 9e-11 >seq194362 Length=24653 Score = 412 bits (456), Expect = 8e-113 Identities = 332/400 (83%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 19480 GAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGCTAGCGTTG 19539 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||||||||||||||||||| | |||||| || ||||||||||||||| | Sbjct 19540 TTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGACCGGAAAGTCAGAGGTGAAATCCC 19599 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 | ||||||||| || ||||| ||||||||| || || |||| | ||| || |||| Sbjct 19600 AGGGCTCAACCTTGGAACTGCCTTTGAAACTATCGGTCTGGAGTTCGAGAGAGGTGAGTG 19659 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 19660 GAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGCG 19719 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 ||| |||| | |||||| |||||| |||||||||||||||||||||||||||||| Sbjct 19720 GCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 19779 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||||||||||||||||||| | || |||||| |||| | | || Sbjct 19780 ACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGTCGTCGGGCAGCAT--GCTGTTCG 19837 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | || | |||| | |||| ||||| ||||||||||| Sbjct 19838 GTGACACACCTAACGGATTAAGCATTCCGCCTGGGGAGTA 19877 >seq186304 Length=18897 Score = 412 bits (456), Expect = 8e-113 Identities = 332/400 (83%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 13724 GAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGCTAGCGTTG 13783 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||||||||||||||||||| | |||||| || ||||||||||||||| | Sbjct 13784 TTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGACCGGAAAGTCAGAGGTGAAATCCC 13843 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 | ||||||||| || ||||| ||||||||| || || |||| | ||| || |||| Sbjct 13844 AGGGCTCAACCTTGGAACTGCCTTTGAAACTATCGGTCTGGAGTTCGAGAGAGGTGAGTG 13903 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 13904 GAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGCG 13963 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 ||| |||| | |||||| |||||| |||||||||||||||||||||||||||||| Sbjct 13964 GCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 14023 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||||||||||||||||||| | || |||||| |||| | | || Sbjct 14024 ACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGTCGTCGGGCAGCAT--GCTGTTCG 14081 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | || | |||| | |||| ||||| ||||||||||| Sbjct 14082 GTGACACACCTAACGGATTAAGCATTCCGCCTGGGGAGTA 14121 >seq180639 Length=8005 Score = 412 bits (456), Expect = 8e-113 Identities = 332/400 (83%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 798 GAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGCTAGCGTTG 857 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||||||||||||||||||| | |||||| || ||||||||||||||| | Sbjct 858 TTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGACCGGAAAGTCAGAGGTGAAATCCC 917 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 | ||||||||| || ||||| ||||||||| || || |||| | ||| || |||| Sbjct 918 AGGGCTCAACCTTGGAACTGCCTTTGAAACTATCGGTCTGGAGTTCGAGAGAGGTGAGTG 977 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 978 GAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGCG 1037 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 ||| |||| | |||||| |||||| |||||||||||||||||||||||||||||| Sbjct 1038 GCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 1097 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||||||||||||||||||| | || |||||| |||| | | || Sbjct 1098 ACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGTCGTCGGGCAGCAT--GCTGTTCG 1155 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | || | |||| | |||| ||||| ||||||||||| Sbjct 1156 GTGACACACCTAACGGATTAAGCATTCCGCCTGGGGAGTA 1195 >seq180638 Length=39462 Score = 412 bits (456), Expect = 8e-113 Identities = 332/400 (83%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 5174 GAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGCTAGCGTTG 5115 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||||||||||||||||||| | |||||| || ||||||||||||||| | Sbjct 5114 TTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGACCGGAAAGTCAGAGGTGAAATCCC 5055 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 | ||||||||| || ||||| ||||||||| || || |||| | ||| || |||| Sbjct 5054 AGGGCTCAACCTTGGAACTGCCTTTGAAACTATCGGTCTGGAGTTCGAGAGAGGTGAGTG 4995 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 4994 GAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGCG 4935 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 ||| |||| | |||||| |||||| |||||||||||||||||||||||||||||| Sbjct 4934 GCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 4875 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||||||||||||||||||| | || |||||| |||| | | || Sbjct 4874 ACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGTCGTCGGGCAGCAT--GCTGTTCG 4817 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | || | |||| | |||| ||||| ||||||||||| Sbjct 4816 GTGACACACCTAACGGATTAAGCATTCCGCCTGGGGAGTA 4777 >seq25622 Length=127 Score = 123 bits (136), Expect = 6e-26 Identities = 95/113 (84%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 127 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 68 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || ||||| || | | |||||| ||||||||||||||||||| || |||||| Sbjct 67 AAGAGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 15 >seq170396 Length=96 Score = 102 bits (112), Expect = 2e-19 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 96 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 37 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCG 96 || ||||| || | | |||||| |||||||||||| Sbjct 36 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCG 1 >seq153214 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||||| | ||||| | |||| |||||||||||||| ||||||| |||| | Sbjct 12 ACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGAAGTCTAT 71 Query 324 GCCGTAAACGATGAATA 340 ||| | | ||||||||| Sbjct 72 GCCCTGACCGATGAATA 88 >seq68885 Length=83 Score = 86.0 bits (94), Expect = 2e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 34 CAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGT 93 |||||| |||||||||||| || |||| || ||||| || | | |||||| ||||||||| Sbjct 1 CAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGGGTGTAAAGGGT 60 Query 94 GCGTAGGTGGTTTCTTAAGT 113 ||| |||||| || |||||| Sbjct 61 GCGAAGGTGGCTTGTTAAGT 80 >seq36892 Length=83 Score = 80.6 bits (88), Expect = 6e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||||| | ||||| | |||| |||||||||||||| |||||||||||| | Sbjct 72 ACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGTAGTCTAT 13 Query 324 GCCGTAAACGAT 335 ||| | | |||| Sbjct 12 GCCCTGACCGAT 1 >seq49591 Length=70 Score = 73.4 bits (80), Expect = 9e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 273 GAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAAC 332 ||||| | ||||| | |||| |||||||||||||| |||||||||||| | ||| | | | Sbjct 70 GAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGTAGTCTATGCCCTGACC 11 Query 333 GATGAATA 340 |||||||| Sbjct 10 GATGAATA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200499032576