Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq213115 154 3e-35 seq215672 84.2 4e-14 seq34670 84.2 4e-14 >seq213115 Length=3823 Score = 154 bits (170), Expect = 3e-35 Identities = 94/100 (94%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 |||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||| Sbjct 1047 TCGTGCTGGGGATAGATCATTGTAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGC 1106 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||||| |||||||||||||||||||||||||||| Sbjct 1107 GAGTCATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 1146 Score = 140 bits (154), Expect = 6e-31 Identities = 102/116 (88%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG-GCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||| | || | |||| |||||||||||||||||||||||||| Sbjct 829 GCTTCTTAGAGGGACTGCTGCGCGCCTAGCCAGCGGAAGTTTGAGGCAATAACAGGTCTG 888 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 889 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATTAATCCAACGAGT 944 >seq215672 Length=42019 Score = 84.2 bits (92), Expect = 4e-14 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTA-TCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||| ||||||||||| | |||| |||| |||||||||||||||||||||||||| Sbjct 1075 GCTTATTAGAGGGACTGCTACGCTCCTAGCCAGCGGAAGTTTGAGGCAATAACAGGTCTG 1016 Query 129 TGATGCCCTTAGATGTTC 146 ||||||||||||||||| Sbjct 1015 GGATGCCCTTAGATGTTC 998 >seq34670 Length=127 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| ||| |||||| ||| | |||||||||||||||| ||||| Sbjct 44 CCTGGGCCGATAGGTCCGGGGAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 103 Query 251 CAATTATTGCTCTTCAACGAGGAA 274 |||||||| |||||||||||||| Sbjct 104 TAATTATTGATCTTCAACGAGGAA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945073706496