Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq194362 268 3e-69 seq186304 268 3e-69 seq180639 268 3e-69 seq180638 268 3e-69 seq156761 86.0 2e-14 seq37970 86.0 2e-14 seq131921 75.2 4e-11 >seq194362 Length=24653 Score = 268 bits (296), Expect = 3e-69 Identities = 334/448 (75%), Gaps = 11/448 (2%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||||| ||||||| |||| |||||||||||| |||||||| ||||| Sbjct 22001 AGACCCGAAACCAGATGATCTAGGCATGAGCAGGATGAAGGTTGGGTAACACCAACTGGA 22060 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||||||||||||| |||||||||| ||||||| |||| |||||||||||||| Sbjct 22061 GGTCCGAACCCACACCTGTTGAAAAAGGTCGGGATGACTTGTGCCTAGGGGTGAAAGGCC 22120 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTC--AAGTA 211 || |||| |||| ||||||||||||| ||||| |||||||||||| ||||| | ||| Sbjct 22121 AATCAAATCTGGAGATAGCTGGTTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGGACGTA 22180 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCT-AGGGGGTCATTGCGACTTACCAAACCAT 270 || | ||||||||||||||||| |||| | | |||| | | ||||| | | Sbjct 22181 TC-CTCTCGGGGGTAGAGCACTG-CATGGATGATGGGGGCCCACAGCCTTACTGAGTCTA 22238 Query 271 TGCAAACTCCGAATGCGCATCAGTTTTA-CCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||||| | | || || ||| | || | ||| ||||||||| ||| Sbjct 22239 AGCAAACTCCGAATACCGAGAAGGACTATCCGGGAGACACACGGC--GGGTGCTAACGTC 22296 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTT 389 ||| |||||| || || || ||| | ||||||||||||| || | ||||||| Sbjct 22297 CGTCGTGGAGAGGGAAACAACCCTGACCAACAGCTAAGGCCCCCAATTCGTGGCTAAGTG 22356 Query 390 AAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCAT 449 | || | || || | | || ||| | |||| |||||||| |||||||||| || | Sbjct 22357 GGA--AAGCATGTGAGACTTCCAAAACAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCT 22413 Query 450 TTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||| ||||||||||||||| ||| Sbjct 22414 TTAAAGATAGCGTAACAGCTCACTGGTC 22441 >seq186304 Length=18897 Score = 268 bits (296), Expect = 3e-69 Identities = 334/448 (75%), Gaps = 11/448 (2%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||||| ||||||| |||| |||||||||||| |||||||| ||||| Sbjct 16245 AGACCCGAAACCAGATGATCTAGGCATGAGCAGGATGAAGGTTGGGTAACACCAACTGGA 16304 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||||||||||||| |||||||||| ||||||| |||| |||||||||||||| Sbjct 16305 GGTCCGAACCCACACCTGTTGAAAAAGGTCGGGATGACTTGTGCCTAGGGGTGAAAGGCC 16364 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTC--AAGTA 211 || |||| |||| ||||||||||||| ||||| |||||||||||| ||||| | ||| Sbjct 16365 AATCAAATCTGGAGATAGCTGGTTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGGACGTA 16424 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCT-AGGGGGTCATTGCGACTTACCAAACCAT 270 || | ||||||||||||||||| |||| | | |||| | | ||||| | | Sbjct 16425 TC-CTCTCGGGGGTAGAGCACTG-CATGGATGATGGGGGCCCACAGCCTTACTGAGTCTA 16482 Query 271 TGCAAACTCCGAATGCGCATCAGTTTTA-CCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||||| | | || || ||| | || | ||| ||||||||| ||| Sbjct 16483 AGCAAACTCCGAATACCGAGAAGGACTATCCGGGAGACACACGGC--GGGTGCTAACGTC 16540 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTT 389 ||| |||||| || || || ||| | ||||||||||||| || | ||||||| Sbjct 16541 CGTCGTGGAGAGGGAAACAACCCTGACCAACAGCTAAGGCCCCCAATTCGTGGCTAAGTG 16600 Query 390 AAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCAT 449 | || | || || | | || ||| | |||| |||||||| |||||||||| || | Sbjct 16601 GGA--AAGCATGTGAGACTTCCAAAACAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCT 16657 Query 450 TTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||| ||||||||||||||| ||| Sbjct 16658 TTAAAGATAGCGTAACAGCTCACTGGTC 16685 >seq180639 Length=8005 Score = 268 bits (296), Expect = 3e-69 Identities = 334/448 (75%), Gaps = 11/448 (2%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||||| ||||||| |||| |||||||||||| |||||||| ||||| Sbjct 3319 AGACCCGAAACCAGATGATCTAGGCATGAGCAGGATGAAGGTTGGGTAACACCAACTGGA 3378 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||||||||||||| |||||||||| ||||||| |||| |||||||||||||| Sbjct 3379 GGTCCGAACCCACACCTGTTGAAAAAGGTCGGGATGACTTGTGCCTAGGGGTGAAAGGCC 3438 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTC--AAGTA 211 || |||| |||| ||||||||||||| ||||| |||||||||||| ||||| | ||| Sbjct 3439 AATCAAATCTGGAGATAGCTGGTTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGGACGTA 3498 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCT-AGGGGGTCATTGCGACTTACCAAACCAT 270 || | ||||||||||||||||| |||| | | |||| | | ||||| | | Sbjct 3499 TC-CTCTCGGGGGTAGAGCACTG-CATGGATGATGGGGGCCCACAGCCTTACTGAGTCTA 3556 Query 271 TGCAAACTCCGAATGCGCATCAGTTTTA-CCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||||| | | || || ||| | || | ||| ||||||||| ||| Sbjct 3557 AGCAAACTCCGAATACCGAGAAGGACTATCCGGGAGACACACGGC--GGGTGCTAACGTC 3614 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTT 389 ||| |||||| || || || ||| | ||||||||||||| || | ||||||| Sbjct 3615 CGTCGTGGAGAGGGAAACAACCCTGACCAACAGCTAAGGCCCCCAATTCGTGGCTAAGTG 3674 Query 390 AAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCAT 449 | || | || || | | || ||| | |||| |||||||| |||||||||| || | Sbjct 3675 GGA--AAGCATGTGAGACTTCCAAAACAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCT 3731 Query 450 TTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||| ||||||||||||||| ||| Sbjct 3732 TTAAAGATAGCGTAACAGCTCACTGGTC 3759 >seq180638 Length=39462 Score = 268 bits (296), Expect = 3e-69 Identities = 334/448 (75%), Gaps = 11/448 (2%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||||| ||||||| |||| |||||||||||| |||||||| ||||| Sbjct 2653 AGACCCGAAACCAGATGATCTAGGCATGAGCAGGATGAAGGTTGGGTAACACCAACTGGA 2594 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||||||||||||| |||||||||| ||||||| |||| |||||||||||||| Sbjct 2593 GGTCCGAACCCACACCTGTTGAAAAAGGTCGGGATGACTTGTGCCTAGGGGTGAAAGGCC 2534 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTC--AAGTA 211 || |||| |||| ||||||||||||| ||||| |||||||||||| ||||| | ||| Sbjct 2533 AATCAAATCTGGAGATAGCTGGTTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGGACGTA 2474 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCT-AGGGGGTCATTGCGACTTACCAAACCAT 270 || | ||||||||||||||||| |||| | | |||| | | ||||| | | Sbjct 2473 TC-CTCTCGGGGGTAGAGCACTG-CATGGATGATGGGGGCCCACAGCCTTACTGAGTCTA 2416 Query 271 TGCAAACTCCGAATGCGCATCAGTTTTA-CCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||||| | | || || ||| | || | ||| ||||||||| ||| Sbjct 2415 AGCAAACTCCGAATACCGAGAAGGACTATCCGGGAGACACACGGC--GGGTGCTAACGTC 2358 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTT 389 ||| |||||| || || || ||| | ||||||||||||| || | ||||||| Sbjct 2357 CGTCGTGGAGAGGGAAACAACCCTGACCAACAGCTAAGGCCCCCAATTCGTGGCTAAGTG 2298 Query 390 AAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCAT 449 | || | || || | | || ||| | |||| |||||||| |||||||||| || | Sbjct 2297 GGA--AAGCATGTGAGACTTCCAAAACAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCT 2241 Query 450 TTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||| ||||||||||||||| ||| Sbjct 2240 TTAAAGATAGCGTAACAGCTCACTGGTC 2213 >seq156761 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 89 CTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAA 148 ||| ||| |||||||| |||||| | ||| |||||||| || | |||||| ||| Sbjct 8 CTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGGGAA 67 Query 149 AGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 68 AGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 122 >seq37970 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 89 CTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAA 148 ||| ||| |||||||| |||||| | ||| |||||||| || | |||||| ||| Sbjct 8 CTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGCGAA 67 Query 149 AGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 68 AGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 122 >seq131921 Length=127 Score = 75.2 bits (82), Expect = 4e-11 Identities = 92/126 (73%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||| |||| || | ||| ||| ||| ||| |||||||| |||||| | ||| Sbjct 2 GCCAGATTGAAAGTACTTTAATACGTACTGAAGGATCGAACCCATGTATGTTGCATAATA 61 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 ||||||| || | ||||||||||||||||| ||| ||| | ||||| || |||| Sbjct 62 CCTGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCT 121 Query 182 CCGAAA 187 ||||| Sbjct 122 ACGAAA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1685807152128