Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq194362 116 7e-24 seq186304 116 7e-24 seq180639 116 7e-24 seq180638 116 7e-24 >seq194362 Length=24653 Score = 116 bits (128), Expect = 7e-24 Identities = 136/182 (75%), Gaps = 9/182 (5%) Strand=Plus/Plus Query 139 CTGAATACATAGGTATGCA-AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 ||||||||||||| | | |||||||| ||| ||||||||||||||||||| | | ||| Sbjct 21505 CTGAATACATAGGGTTCAAGAAGCGAACCCGGGGAACTGAAACATCTAAGTACCCGGAGG 21564 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGA 257 ||| ||||||||| || | |||| |||||||||||||||| |||| |||| || Sbjct 21565 AAAGGAAATCAACAGATACTCCCCTAGTAGTGGCGAGCGAACGGGGACCAGCCGAGCCGT 21624 Query 258 GATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCG 317 || |||| | |||| ||||||| ||||| ||||||||| ||||||| Sbjct 21625 GA-----GAAT---GACCAGAATGTGCTGGAAAGCACAGCCAGAGCGGGTGACAGCCCCG 21676 Query 318 TA 319 || Sbjct 21677 TA 21678 Score = 86.0 bits (94), Expect = 1e-14 Identities = 85/109 (78%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68 |||||||||||||||| | |||||||||||||||| || | |||||||||| || Sbjct 21333 TGGTGGATGCCTTGGCAGCAAGAGGCGATGAAGGACGTGATACCCTGCGATAAGCCATGG 21392 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 |||| | || | ||||||||| ||| ||||||||||||||||| Sbjct 21393 GGAG-CCGGGAATAGGCTTTGATCCATGGATCTCCGAATGGGGAAACCC 21440 >seq186304 Length=18897 Score = 116 bits (128), Expect = 7e-24 Identities = 136/182 (75%), Gaps = 9/182 (5%) Strand=Plus/Plus Query 139 CTGAATACATAGGTATGCA-AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 ||||||||||||| | | |||||||| ||| ||||||||||||||||||| | | ||| Sbjct 15749 CTGAATACATAGGGTTCAAGAAGCGAACCCGGGGAACTGAAACATCTAAGTACCCGGAGG 15808 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGA 257 ||| ||||||||| || | |||| |||||||||||||||| |||| |||| || Sbjct 15809 AAAGGAAATCAACAGATACTCCCCTAGTAGTGGCGAGCGAACGGGGACCAGCCGAGCCGT 15868 Query 258 GATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCG 317 || |||| | |||| ||||||| ||||| ||||||||| ||||||| Sbjct 15869 GA-----GAAT---GACCAGAATGTGCTGGAAAGCACAGCCAGAGCGGGTGACAGCCCCG 15920 Query 318 TA 319 || Sbjct 15921 TA 15922 Score = 86.0 bits (94), Expect = 1e-14 Identities = 85/109 (78%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68 |||||||||||||||| | |||||||||||||||| || | |||||||||| || Sbjct 15577 TGGTGGATGCCTTGGCAGCAAGAGGCGATGAAGGACGTGATACCCTGCGATAAGCCATGG 15636 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 |||| | || | ||||||||| ||| ||||||||||||||||| Sbjct 15637 GGAG-CCGGGAATAGGCTTTGATCCATGGATCTCCGAATGGGGAAACCC 15684 >seq180639 Length=8005 Score = 116 bits (128), Expect = 7e-24 Identities = 136/182 (75%), Gaps = 9/182 (5%) Strand=Plus/Plus Query 139 CTGAATACATAGGTATGCA-AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 ||||||||||||| | | |||||||| ||| ||||||||||||||||||| | | ||| Sbjct 2823 CTGAATACATAGGGTTCAAGAAGCGAACCCGGGGAACTGAAACATCTAAGTACCCGGAGG 2882 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGA 257 ||| ||||||||| || | |||| |||||||||||||||| |||| |||| || Sbjct 2883 AAAGGAAATCAACAGATACTCCCCTAGTAGTGGCGAGCGAACGGGGACCAGCCGAGCCGT 2942 Query 258 GATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCG 317 || |||| | |||| ||||||| ||||| ||||||||| ||||||| Sbjct 2943 GA-----GAAT---GACCAGAATGTGCTGGAAAGCACAGCCAGAGCGGGTGACAGCCCCG 2994 Query 318 TA 319 || Sbjct 2995 TA 2996 Score = 86.0 bits (94), Expect = 1e-14 Identities = 85/109 (78%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68 |||||||||||||||| | |||||||||||||||| || | |||||||||| || Sbjct 2651 TGGTGGATGCCTTGGCAGCAAGAGGCGATGAAGGACGTGATACCCTGCGATAAGCCATGG 2710 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 |||| | || | ||||||||| ||| ||||||||||||||||| Sbjct 2711 GGAG-CCGGGAATAGGCTTTGATCCATGGATCTCCGAATGGGGAAACCC 2758 >seq180638 Length=39462 Score = 116 bits (128), Expect = 7e-24 Identities = 136/182 (75%), Gaps = 9/182 (5%) Strand=Plus/Minus Query 139 CTGAATACATAGGTATGCA-AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 ||||||||||||| | | |||||||| ||| ||||||||||||||||||| | | ||| Sbjct 3149 CTGAATACATAGGGTTCAAGAAGCGAACCCGGGGAACTGAAACATCTAAGTACCCGGAGG 3090 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGA 257 ||| ||||||||| || | |||| |||||||||||||||| |||| |||| || Sbjct 3089 AAAGGAAATCAACAGATACTCCCCTAGTAGTGGCGAGCGAACGGGGACCAGCCGAGCCGT 3030 Query 258 GATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCG 317 || |||| | |||| ||||||| ||||| ||||||||| ||||||| Sbjct 3029 GA-----GAAT---GACCAGAATGTGCTGGAAAGCACAGCCAGAGCGGGTGACAGCCCCG 2978 Query 318 TA 319 || Sbjct 2977 TA 2976 Score = 86.0 bits (94), Expect = 1e-14 Identities = 85/109 (78%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68 |||||||||||||||| | |||||||||||||||| || | |||||||||| || Sbjct 3321 TGGTGGATGCCTTGGCAGCAAGAGGCGATGAAGGACGTGATACCCTGCGATAAGCCATGG 3262 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 |||| | || | ||||||||| ||| ||||||||||||||||| Sbjct 3261 GGAG-CCGGGAATAGGCTTTGATCCATGGATCTCCGAATGGGGAAACCC 3214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916338357312