Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq194362 168 1e-39 seq186304 168 1e-39 seq180639 168 1e-39 seq180638 168 1e-39 >seq194362 Length=24653 Score = 168 bits (186), Expect = 1e-39 Identities = 223/313 (71%), Gaps = 20/313 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| |||| ||| ||||| || Sbjct 19512 GGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCTGCTGGTACCGTCA------------- 19466 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||||| | ||||| ||||||| || || |||||||| |||||| Sbjct 19465 ------TTATCTTCCCAGCTGAAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACGC 19413 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||| | |||| | | |||||| | || ||||| |||||||||||||||||| Sbjct 19412 GGCATGGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAG 19353 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||| | | |||| || Sbjct 19352 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAAACCAGCTATGGAT 19293 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| |||| ||| |||| ||||||| || |||||||||| ||||| | ||| | | Sbjct 19292 CGTCGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCCAACGCGGGCTGATCCTTCT 19233 Query 301 CCGATGAATCTTT 313 ||||| ||||||| Sbjct 19232 CCGATAAATCTTT 19220 >seq186304 Length=18897 Score = 168 bits (186), Expect = 1e-39 Identities = 223/313 (71%), Gaps = 20/313 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| |||| ||| ||||| || Sbjct 13756 GGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCTGCTGGTACCGTCA------------- 13710 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||||| | ||||| ||||||| || || |||||||| |||||| Sbjct 13709 ------TTATCTTCCCAGCTGAAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACGC 13657 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||| | |||| | | |||||| | || ||||| |||||||||||||||||| Sbjct 13656 GGCATGGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAG 13597 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||| | | |||| || Sbjct 13596 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAAACCAGCTATGGAT 13537 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| |||| ||| |||| ||||||| || |||||||||| ||||| | ||| | | Sbjct 13536 CGTCGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCCAACGCGGGCTGATCCTTCT 13477 Query 301 CCGATGAATCTTT 313 ||||| ||||||| Sbjct 13476 CCGATAAATCTTT 13464 >seq180639 Length=8005 Score = 168 bits (186), Expect = 1e-39 Identities = 223/313 (71%), Gaps = 20/313 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| |||| ||| ||||| || Sbjct 830 GGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCTGCTGGTACCGTCA------------- 784 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||||| | ||||| ||||||| || || |||||||| |||||| Sbjct 783 ------TTATCTTCCCAGCTGAAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACGC 731 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||| | |||| | | |||||| | || ||||| |||||||||||||||||| Sbjct 730 GGCATGGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAG 671 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||| | | |||| || Sbjct 670 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAAACCAGCTATGGAT 611 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| |||| ||| |||| ||||||| || |||||||||| ||||| | ||| | | Sbjct 610 CGTCGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCCAACGCGGGCTGATCCTTCT 551 Query 301 CCGATGAATCTTT 313 ||||| ||||||| Sbjct 550 CCGATAAATCTTT 538 >seq180638 Length=39462 Score = 168 bits (186), Expect = 1e-39 Identities = 223/313 (71%), Gaps = 20/313 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| |||| ||| ||||| || Sbjct 5142 GGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCTGCTGGTACCGTCA------------- 5188 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||||| | ||||| ||||||| || || |||||||| |||||| Sbjct 5189 ------TTATCTTCCCAGCTGAAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACGC 5241 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||| | |||| | | |||||| | || ||||| |||||||||||||||||| Sbjct 5242 GGCATGGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAG 5301 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||| | | |||| || Sbjct 5302 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAAACCAGCTATGGAT 5361 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| |||| ||| |||| ||||||| || |||||||||| ||||| | ||| | | Sbjct 5362 CGTCGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCCAACGCGGGCTGATCCTTCT 5421 Query 301 CCGATGAATCTTT 313 ||||| ||||||| Sbjct 5422 CCGATAAATCTTT 5434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1066400736384