Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq208965 482 7e-134 seq182525 482 7e-134 >seq208965 Length=1139 Score = 482 bits (534), Expect = 7e-134 Identities = 450/576 (78%), Gaps = 73/576 (13%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||||| Sbjct 290 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTAC 349 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 350 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 409 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 410 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGG 469 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG- 237 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 470 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGT 529 Query 238 --GCTCAAGG-------CCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAGCCCC 287 | ||||| ||||||| || | ||||| ||||||||||| ||||| Sbjct 530 CCCCACAAGGAGGACATGAATGCGATCCGAAAGAGTTACTATGAATCACC-AGGAGTGTT 588 Query 288 GAAG--------GGC-GTTGGTTTTTTATCTAATAAATACACCCCT-------TCCGAAG 331 |||| ||| | |||||||| | |||||||||||| |||| | ||| | Sbjct 589 GAAGCCGTTGCCGGCTGCTGGTTTTTAACCTAATAAATACATCCCTCTGCGCATGCGAGG 648 Query 332 -----------------------------TCGGGGTTTTTAGCATGTATTAGCTCTAGAA 362 ||||| || ||||||||||||||||||| Sbjct 649 ACGAGGCCGTGAAGCCCCGCCCCCCGCGCTCGGGACCTTGCGCATGTATTAGCTCTAGAA 708 Query 363 TTACCACGGTTATCCATGTAG-------------TAAGGTACTATCAAATAAACGATAAC 409 |||||||||||||||| |||| ||| || ||||||||||| ||||| Sbjct 709 TTACCACGGTTATCCAAGTAGGTAAAAAAAGACAAAAGAGACCATCAAATAAACTATAAC 768 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATG 468 |||||||||||||||| |||||| || | ||||| | ||||||||||||||||||||| Sbjct 769 TGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAGCTTATACTTAGACATGCATG 828 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| Sbjct 829 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 864 >seq182525 Length=1023 Score = 482 bits (534), Expect = 7e-134 Identities = 450/576 (78%), Gaps = 73/576 (13%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||||| Sbjct 734 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTAC 675 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 674 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 615 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 614 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGG 555 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG- 237 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 554 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGT 495 Query 238 --GCTCAAGG-------CCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAGCCCC 287 | ||||| ||||||| || | ||||| ||||||||||| ||||| Sbjct 494 CCCCACAAGGAGGACATGAATGCGATCCGAAAGAGTTACTATGAATCACC-AGGAGTGTT 436 Query 288 GAAG--------GGC-GTTGGTTTTTTATCTAATAAATACACCCCT-------TCCGAAG 331 |||| ||| | |||||||| | |||||||||||| |||| | ||| | Sbjct 435 GAAGCCGTTGCCGGCTGCTGGTTTTTAACCTAATAAATACATCCCTCTGCGCATGCGAGG 376 Query 332 -----------------------------TCGGGGTTTTTAGCATGTATTAGCTCTAGAA 362 ||||| || ||||||||||||||||||| Sbjct 375 ACGAGGCCGTGAAGCCCCGCCCCCCGCGCTCGGGACCTTGCGCATGTATTAGCTCTAGAA 316 Query 363 TTACCACGGTTATCCATGTAG-------------TAAGGTACTATCAAATAAACGATAAC 409 |||||||||||||||| |||| ||| || ||||||||||| ||||| Sbjct 315 TTACCACGGTTATCCAAGTAGGTAAAAAAAGACAAAAGAGACCATCAAATAAACTATAAC 256 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATG 468 |||||||||||||||| |||||| || | ||||| | ||||||||||||||||||||| Sbjct 255 TGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAGCTTATACTTAGACATGCATG 196 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| Sbjct 195 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507009423872