Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_031264.1 Length=46877 Score E Sequences producing significant alignments: (Bits) Value seq197527 255 2e-63 >seq197527 Length=40067 Score = 255 bits (282), Expect = 2e-63 Identities = 342/476 (72%), Gaps = 0/476 (0%) Strand=Plus/Minus Query 3604 ATCACCATCCTTGACGTTATCGGTGAAGATTACTGGTCTGGAGGTGGCGTTACGTCGAAA 3663 |||| ||| || ||||| ||||||| || ||| |||| | ||||| || | || Sbjct 26165 ATCAGCATGCTCGACGTGATCGGTGCGGACGGATGGACTGGCGACGGCGTGACAGCCAAC 26106 Query 3664 CGGGTTGCAGCGGCGCTTCGGGCTATCGGCAACAATGAAATCTTTGTCGATATCAACTCT 3723 || | || ||||| || ||| | ||| | | | || ||| ||||| ||||| Sbjct 26105 CGCATCGCCGCGGCCCTGCGGTCGATCACCGCCGACGAGATCACGGTCGACCTCAACAGC 26046 Query 3724 CCGGGCGGGGACTTCTTTGAAGGTGTGGCGATCTACAATCTGCTGCGCGCGCACCCGGCG 3783 || ||||| |||||||| || || |||||||||||||| |||||||||| | |||| Sbjct 26045 CCCGGCGGCGACTTCTTCGAGGGCGTGGCGATCTACAACCTGCTGCGCGAGGACCCACGC 25986 Query 3784 AAAGTCACAGTGCGCATTCTCGGCATGGCCGCTTCTGCCGCATCTGTTATCGCTATGGCC 3843 || ||||| || ||||| ||||| | ||||| || ||||| || || ||||| |||||| Sbjct 25985 AAGGTCACGGTCCGCATCCTCGGGCTTGCCGCCTCCGCCGCCTCGGTGATCGCCATGGCC 25926 Query 3844 GGTGATGAAGTCCTGATCGGCAAGGCAGGCTTCATTATGGTGCACAACGCTTGGGTTGTC 3903 || || || |||| ||||||| || || ||| | ||| | ||||| || ||||| ||| Sbjct 25925 GGCGACGAGGTCCAGATCGGCCGTGCCGGATTCCTGATGCTCCACAATGCCTGGGTGGTC 25866 Query 3904 GCGATGGGCAACCGCCACGATCTGGCCGAAGCCGCGAAGACCATGGAACCATTCGATGAC 3963 || || |||||||||||||| ||||||| || || |||||||| || ||||||| Sbjct 25865 GCCATCGGCAACCGCCACGACCTGGCCGCGGCGGCCGAGACCATGATCCCCTTCGATGCG 25806 Query 3964 GCGATGGCAACGCTTTATTCTGAGCGGGCCAACGTCAAGAAGGCAAAGGCCGCTGAATGG 4023 || ||||| | | || | | |||| |||| | || ||||| | ||| Sbjct 25805 GCCATGGCCGAGGTCTACGCCGCCAAGGCCGGCGTCGATCCGGATGTCGCCGCCGCCTGG 25746 Query 4024 ATGGACGCCGAGACATGGTTCAACGGTGAACAGGCCATCGAAGCCGGTCTTGCTGA 4079 ||||| |||||||| ||||||| ||| | ||||||||||| ||||| || || || Sbjct 25745 ATGGATGCCGAGACCTGGTTCAGCGGAGCGCAGGCCATCGACGCCGGGCTCGCGGA 25690 Score = 84.2 bits (92), Expect = 7e-12 Identities = 157/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 628 AGCCGTGGCAGGTATTCGTCCTGAGCACGGCATTCGGCTGGGTTGACGCAGATGGAAACA 687 ||||||||||| ||||| || || | | ||||||||| || ||||| Sbjct 29768 AGCCGTGGCAGCAGTTCGTGGTGGGCTCCGTCTTCGGCTGGAAGCGGGCGGATGGCTTGC 29709 Query 688 GGCGGTTTCGCCGGGTGTATGTCGAGGTTCCCAGAGGTAACGGCAAGTCGTCGTTCTCGT 747 ||||||| || || ||||||||||| || | |||||||||||| | || | Sbjct 29708 GGCGGTTCCGAACGGCCTATGTCGAGGTCGCCCGCAAGAACGGCAAGTCGGCC--CTGCT 29651 Query 748 CTCCGG--TGGGGCTATACATGCTGG-CGCTTGATGGCGAAGCCGGTGCAGAAGTCTATT 804 |||| | | ||| || ||||| |||| || ||||| ||||| || | |||||| Sbjct 29650 GGCCGGGATCGCGCTCTATGCGCTGGTCGCT-GACGGCGAGGCCGGCGCGCATGTCTATG 29592 Query 805 CGGCGGCTACAACCCGCGATCAGGCCCGTATCGTATTCCGCGATGC 850 | || || || |||||||||||||| || ||||| ||| |||| || Sbjct 29591 CAGCCGCGACCACCCGCGATCAGGCGCGCATCGTCTTCGGCGAGGC 29546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149485248528876