Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq194362 114 2e-20 seq186304 114 2e-20 seq180639 114 2e-20 seq180638 114 2e-20 >seq194362 Length=24653 Score = 114 bits (126), Expect = 2e-20 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142791 TCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 20892 TCGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGA 20951 Query 142851 GTCCGTTATTCTCCACCA 142868 ||||||| |||||||| Sbjct 20952 ATCCGTTAGGCTCCACCA 20969 >seq186304 Length=18897 Score = 114 bits (126), Expect = 2e-20 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142791 TCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 15136 TCGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGA 15195 Query 142851 GTCCGTTATTCTCCACCA 142868 ||||||| |||||||| Sbjct 15196 ATCCGTTAGGCTCCACCA 15213 >seq180639 Length=8005 Score = 114 bits (126), Expect = 2e-20 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142791 TCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2210 TCGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGA 2269 Query 142851 GTCCGTTATTCTCCACCA 142868 ||||||| |||||||| Sbjct 2270 ATCCGTTAGGCTCCACCA 2287 >seq180638 Length=39462 Score = 114 bits (126), Expect = 2e-20 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142791 TCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3762 TCGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGA 3703 Query 142851 GTCCGTTATTCTCCACCA 142868 ||||||| |||||||| Sbjct 3702 ATCCGTTAGGCTCCACCA 3685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689518948198320