Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq17723 86.0 3e-15 seq17709 86.0 3e-15 seq17708 86.0 3e-15 seq17248 86.0 3e-15 seq16186 86.0 3e-15 >seq17723 Length=527 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 428 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 487 Query 111 TCTTCGA 117 ||||||| Sbjct 488 TCTTCGA 494 >seq17709 Length=528 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 100 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 41 Query 111 TCTTCGA 117 ||||||| Sbjct 40 TCTTCGA 34 >seq17708 Length=528 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 429 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 488 Query 111 TCTTCGA 117 ||||||| Sbjct 489 TCTTCGA 495 >seq17248 Length=562 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 243 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 302 Query 111 TCTTCGA 117 ||||||| Sbjct 303 TCTTCGA 309 >seq16186 Length=661 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 234 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 175 Query 111 TCTTCGA 117 ||||||| Sbjct 174 TCTTCGA 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278352764220