Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq17248 206 5e-51 seq16186 161 2e-37 seq17729 80.6 5e-13 >seq17248 Length=562 Score = 206 bits (228), Expect = 5e-51 Identities = 200/254 (79%), Gaps = 25/254 (10%) Strand=Plus/Minus Query 88 ATTAGAGTGTTCAAAGCAGGCC-------TTTGCT-----CGAATACATTAGCATGGAAT 135 ||||||||||||||||||||| ||| || ||||||||||||||||| || Sbjct 562 ATTAGAGTGTTCAAAGCAGGCAGATCCAATTTTCTGCCACCGAATACATTAGCATGGGAT 503 Query 136 AATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTTT--------CTAGGACCGCCGT 184 ||| ||||||||| || | ||||||| |||||||| | ||||| || Sbjct 502 AATGGAATAGGACCCTGTCCTCCTATTTTCAGTTGGTTTTGGCAGCGCGAGGACTAGGGT 443 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||||| |||| | | |||| |||||||||||||||||||||||| Sbjct 442 AATGATTAATAGGGATAGTTGGGGCATTAA-TATTTAATTGTCAGAGGTGAAATTCTTGG 384 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 |||||| |||| ||||| |||||||||| | |||||||||||||||||||||| || Sbjct 383 ATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCATTAATCA-AGA 325 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 324 ACGAAAGTTAGGGG 311 >seq16186 Length=661 Score = 161 bits (178), Expect = 2e-37 Identities = 119/136 (88%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||||||||||||| |||| | | |||| |||||||||||||||||||||| Sbjct 33 GTAATGATTAATAGGGATAGTTGGGGCATTAA-TATTTAATTGTCAGAGGTGAAATTCTT 91 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| |||| ||||| |||||||||| | |||||||||||||||||||||| Sbjct 92 GGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCATTAATCA-A 150 Query 303 GAACGAAAGTTAGGGG 318 |||||||||||||||| Sbjct 151 GAACGAAAGTTAGGGG 166 >seq17729 Length=526 Score = 80.6 bits (88), Expect = 5e-13 Identities = 81/106 (76%), Gaps = 12/106 (11%) Strand=Plus/Plus Query 55 GTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC------ 108 || || ||| |||| | ||||| |||||||||||||||||||||||||||| Sbjct 406 GTCCCTGGGGCCCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATCC 465 Query 109 -CTTTGCT-----CGAATACATTAGCATGGAATAATAGAATAGGAC 148 ||| || ||||||||||||||||| ||||| ||||||||| Sbjct 466 AATTTTCTGCCACCGAATACATTAGCATGGGATAATGGAATAGGAC 511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915034367104