Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq17190 172 2e-40 seq17562 163 1e-37 seq15717 154 6e-35 seq15710 154 6e-35 seq15163 154 6e-35 >seq17190 Length=567 Score = 172 bits (190), Expect = 2e-40 Identities = 238/337 (71%), Gaps = 37/337 (11%) Strand=Plus/Plus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || || | | || ||||||||| ||||||||||||||||||||||| Sbjct 10 GATGCTGGCGGAACGGCGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAC 69 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAG-------------TGAA 488 | |||||||| ||||| |||||| | ||||| | |||||| | | Sbjct 70 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGGAGTGAAAGCAGAGGGCGGCATTAAG 129 Query 489 CGG-------AGGTGGGAACCCGTGAGGGTGC--------------ACCATCGACCGATC 527 ||| ||||||||| || | |||| |||| || |||| | Sbjct 130 CGGTCGCCTGAGGTGGGAAGGGGTATGCGTGCGCGCGTGCTCCCGCACCACCGGCCGACC 189 Query 528 CTGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586 ||| | ||| || || |||||| ||||| || |||||||||||||||||| |||| Sbjct 190 TGGATTTTCTT--GAAGGGTTTGAGCCAGAGCGTATTTGTTGGGACCCGAAAGATTGTGA 247 Query 587 ACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGG 646 |||||| ||| ||| |||||||||||||||||||||||||| || || | | ||| Sbjct 248 ACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTGA 307 Query 647 CGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| || || | ||| ||||||||||| Sbjct 308 CGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 344 >seq17562 Length=539 Score = 163 bits (180), Expect = 1e-37 Identities = 238/338 (70%), Gaps = 39/338 (12%) Strand=Plus/Plus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || || | | || ||||||||| ||||||||||||||||||||||| Sbjct 150 GATGCTGGCGGAACGGCGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAC 209 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTG-CGCGTAATGAAAG-------------TGA 487 | |||||||| ||||| |||||| | | |||| | |||||| | | Sbjct 210 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGGCGCGGAGTGAAAGCAGAGGGCGGCATTAA 269 Query 488 ACGG-------AGGTGGGAACCCGTGAGGGTGC--------------ACCATCGACCGAT 526 ||| ||||||||| || | |||| |||| || |||| Sbjct 270 GCGGTCGCCTGAGGTGGGAAGGGGTATGCGTGCGCGCGTGCTCCCGCACCA-CGGCCGAC 328 Query 527 CCTGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTG 585 | ||| | ||| || || |||||| ||||| || |||||||||||||||||| ||| Sbjct 329 CTGGATTTTCTT--GAAGGGTTTGAGCCAGAGCGTATTTGTTGGGACCCGAAAGATTGTG 386 Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 ||||||| ||| ||| |||||||||||||||||||||||||| || || | | ||| Sbjct 387 AACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTG 446 Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| || || | ||| ||||||||||| Sbjct 447 ACGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 484 >seq15717 Length=712 Score = 154 bits (170), Expect = 6e-35 Identities = 133/163 (82%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 489 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 548 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| || |||||||||||||| ||||||| |||| ||||||||||||| |||||| Sbjct 549 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTG 608 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 609 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 650 >seq15710 Length=713 Score = 154 bits (170), Expect = 6e-35 Identities = 133/163 (82%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 489 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 548 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| || |||||||||||||| ||||||| |||| ||||||||||||| |||||| Sbjct 549 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTG 608 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 609 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 650 >seq15163 Length=781 Score = 154 bits (170), Expect = 6e-35 Identities = 133/163 (82%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 295 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 236 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| || |||||||||||||| ||||||| |||| ||||||||||||| |||||| Sbjct 235 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTG 176 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 175 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079611797900