Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq17788 87.8 5e-15 seq17513 86.0 2e-14 seq16966 78.8 2e-12 >seq17788 Length=523 Score = 87.8 bits (96), Expect = 5e-15 Identities = 85/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 9 AAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGT 68 ||| | |||| | | |||||| ||||||||||| |||||||||||| || | || || || Sbjct 523 AAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGT 464 Query 69 TAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 || ||| | | |||||| |||||| ||||| ||| || |||| |||| Sbjct 463 TATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 418 >seq17513 Length=543 Score = 86.0 bits (94), Expect = 2e-14 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT-GGCGAAGGCAGCCCCCTG 258 ||||| ||||||| | ||||| | |||| |||| ||||||||| || || Sbjct 507 GTGTAAAGGTGAAATTTTTCGATATTTAAAGGACATGCAATAGGCGAAGGCTGCTATCTA 448 Query 259 GGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 318 ||| |||||| || | |||| ||||| | |||| |||||||||||||| |||||||| Sbjct 447 TTTTAATACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGT 388 Query 319 AGTCCACGCCCTAAACGAT 337 |||| | ||||| | |||| Sbjct 387 AGTCTATGCCCTGACCGAT 369 >seq16966 Length=587 Score = 78.8 bits (86), Expect = 2e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 262 TAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGT 321 ||| |||||| || | |||| ||||| | |||| |||||||||||||| ||||||||||| Sbjct 570 TAATACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGTAGT 511 Query 322 CCACGCCCTAAACGAT 337 | | ||||| | |||| Sbjct 510 CTATGCCCTGACCGAT 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289366608192