Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq17772 113 1e-22 seq16966 98.7 3e-18 >seq17772 Length=524 Score = 113 bits (124), Expect = 1e-22 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || || |||||||||| ||| || ||| ||||||||||||||| ||||||||| | Sbjct 352 GAAGAAGTCAAATCATTATGGCCTATATAGGTTGGGCTACACACGTACTACAATGGTAAT 293 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 |||| | | ||| ||| | ||| | ||| ||| | |||| || || ||||| || Sbjct 292 TACAGTGTGAAGCAAAAATGTGAGTTTTAGCTAAT-CATTAAAATTAACCTTAGTTCTGA 234 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGC 477 || | |||| || |||| ||||||| ||||||||||||||||| ||| || |||| Sbjct 233 TTATTCTCTGTAAGTCGAGAGTATGAAGTAGGAATCGCTAGTAATCGCAGAATAGAATGC 174 Query 478 TACGGTGAATA 488 | | ||||||| Sbjct 173 TGC-GTGAATA 164 >seq16966 Length=587 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 434 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 375 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 374 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503727806080