Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq17723 205 1e-50 seq17709 205 1e-50 seq17708 205 1e-50 seq16186 205 1e-50 seq14311 147 3e-33 >seq17723 Length=527 Score = 205 bits (226), Expect = 1e-50 Identities = 115/116 (99%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 51 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAA 110 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 111 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 166 >seq17709 Length=528 Score = 205 bits (226), Expect = 1e-50 Identities = 115/116 (99%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 478 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAA 419 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 363 >seq17708 Length=528 Score = 205 bits (226), Expect = 1e-50 Identities = 115/116 (99%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 51 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAA 110 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 111 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 166 >seq16186 Length=661 Score = 205 bits (226), Expect = 1e-50 Identities = 115/116 (99%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 611 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAA 552 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 551 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 496 >seq14311 Length=906 Score = 147 bits (162), Expect = 3e-33 Identities = 103/116 (89%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 ACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 237 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGC 116 |||||||||||||||||||||| ||||| | || || |||||||||||||||| Sbjct 236 CCTGTTATTGCCTCAAACTTCCGCTGGCTAGGCGCGCAGCAGTCCCTCTAAGAAGC 181 Score = 84.2 bits (92), Expect = 3e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 49 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796660301538