Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq15435 228 1e-57 seq5459 143 5e-32 seq18069 118 2e-24 seq18059 118 2e-24 >seq15435 Length=745 Score = 228 bits (252), Expect = 1e-57 Identities = 167/197 (85%), Gaps = 13/197 (7%) Strand=Plus/Plus Query 110 ACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 60 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGC 229 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 61 GACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGAC 120 Query 230 ACCTCTAGCCTCAAATTTCGA-------------GGGACTAAAGGATCGATAGGCCACAC 276 ||||||||| |||||| ||| | ||||||||||||||||||| | Sbjct 121 ACCTCTAGCTTCAAATCCCGAAATATAAATAAACGACTCTAAAGGATCGATAGGCCATGC 180 Query 277 TTTCATGGTTTGTATTC 293 ||||| |||||||||| Sbjct 181 TTTCACAGTTTGTATTC 197 >seq5459 Length=2777 Score = 143 bits (158), Expect = 5e-32 Identities = 91/99 (92%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 2387 CATCAGTAGGGTAAAACTAACCTGTCTCACAACAGTCTAAACCCAGCTCACATTCCCTAT 2446 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||||||||||| |||| | ||||||||||| Sbjct 2447 TAGTGGGTGAACAATCCAATGCTTGGCAAATTCTGCTTC 2485 Score = 109 bits (120), Expect = 9e-22 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||||| ||||| |||||||||||||| | ||| |||||||| |||||||| Sbjct 2684 ATGATAGGAAGAGCTGACATTGAAGGATCAAAAAGTGATGTCACTATGAACACTTGGCTG 2743 Query 194 CCACAAGCCAGTTATCCCTG 213 ||||||||||||||||| || Sbjct 2744 CCACAAGCCAGTTATCCTTG 2763 >seq18069 Length=502 Score = 118 bits (130), Expect = 2e-24 Identities = 99/124 (80%), Gaps = 13/124 (10%) Strand=Plus/Plus Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 1 ACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCA 60 Query 243 AATTTCGA-------------GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289 ||| ||| | ||||||||||||||||||| |||||| |||||| Sbjct 61 AATCCCGAAATATAAATAAACGACTCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGT 120 Query 290 ATTC 293 |||| Sbjct 121 ATTC 124 >seq18059 Length=503 Score = 118 bits (130), Expect = 2e-24 Identities = 99/124 (80%), Gaps = 13/124 (10%) Strand=Plus/Plus Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 1 ACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCA 60 Query 243 AATTTCGA-------------GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289 ||| ||| | ||||||||||||||||||| |||||| |||||| Sbjct 61 AATCCCGAAATATAAATAAACGACTCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGT 120 Query 290 ATTC 293 |||| Sbjct 121 ATTC 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854245370688