Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq18068 136 8e-30 seq17805 132 1e-28 seq17513 132 1e-28 seq17249 120 7e-25 seq18098 96.9 7e-18 seq18086 96.9 7e-18 seq17448 96.9 7e-18 >seq18068 Length=502 Score = 136 bits (150), Expect = 8e-30 Identities = 142/181 (78%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 398 CCTTCTGATCACCCACGTAACATTATCTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 339 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 ||||||||||| | ||| || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 338 CCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 281 Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 |||||| ||||| || | ||||||| |||| ||| ||||| || |||||| |||||| Sbjct 280 CTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAATC 221 Query 195 C 195 | Sbjct 220 C 220 >seq17805 Length=522 Score = 132 bits (146), Expect = 1e-28 Identities = 142/181 (78%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 113 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 171 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 ||||||||||| | ||| || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 172 CCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 229 Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 |||||| ||||| || | ||||||| |||| ||| ||||| || |||||| |||||| Sbjct 230 CTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAATC 289 Query 195 C 195 | Sbjct 290 C 290 >seq17513 Length=543 Score = 132 bits (146), Expect = 1e-28 Identities = 142/181 (78%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 343 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 285 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 ||||||||||| | ||| || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 284 CCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 227 Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 |||||| ||||| || | ||||||| |||| ||| ||||| || |||||| |||||| Sbjct 226 CTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAATC 167 Query 195 C 195 | Sbjct 166 C 166 >seq17249 Length=562 Score = 120 bits (132), Expect = 7e-25 Identities = 141/183 (77%), Gaps = 7/183 (4%) Strand=Plus/Plus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 113 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 171 Query 76 CCACTGCTGCC--TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCA- 132 ||||||||||| | | | || | ||| |||| | ||||| ||| |||| ||||||| Sbjct 172 CCACTGCTGCCCTTTTAGAAAGACT-TGGGCCGT-TTTCAGTCCCAATGTGGCTGATCAT 229 Query 133 TCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAA 192 || ||||| ||||| || | ||||||| |||| ||| ||||| || |||||| |||| Sbjct 230 TCATCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAA 289 Query 193 TCC 195 ||| Sbjct 290 TCC 292 >seq18098 Length=500 Score = 96.9 bits (106), Expect = 7e-18 Identities = 101/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGAC 126 ||||||| ||||||||||| | ||| || | ||| |||| | ||||| ||| |||| | Sbjct 2 AATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGC 59 Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 ||||||| |||||| ||||| || | ||||||| |||| ||| ||||| || ||||| Sbjct 60 TGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 119 Query 187 AGCTAATCC 195 | ||||||| Sbjct 120 ACCTAATCC 128 >seq18086 Length=501 Score = 96.9 bits (106), Expect = 7e-18 Identities = 101/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGAC 126 ||||||| ||||||||||| | ||| || | ||| |||| | ||||| ||| |||| | Sbjct 2 AATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGC 59 Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 ||||||| |||||| ||||| || | ||||||| |||| ||| ||||| || ||||| Sbjct 60 TGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 119 Query 187 AGCTAATCC 195 | ||||||| Sbjct 120 ACCTAATCC 128 >seq17448 Length=547 Score = 96.9 bits (106), Expect = 7e-18 Identities = 101/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGAC 126 ||||||| ||||||||||| | ||| || | ||| |||| | ||||| ||| |||| | Sbjct 546 AATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGC 489 Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 ||||||| |||||| ||||| || | ||||||| |||| ||| ||||| || ||||| Sbjct 488 TGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 429 Query 187 AGCTAATCC 195 | ||||||| Sbjct 428 ACCTAATCC 420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071805989440