Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq18068 102 2e-19 seq17805 102 2e-19 seq17513 102 2e-19 seq17249 89.7 1e-15 seq18098 86.0 1e-14 seq18086 86.0 1e-14 seq17448 86.0 1e-14 seq17788 73.4 8e-11 >seq18068 Length=502 Score = 102 bits (112), Expect = 2e-19 Identities = 115/150 (77%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | ||| || || |||| Sbjct 368 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGC 310 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 309 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 251 Query 131 GTGGGCTATTATCTCACCAACTACCTAATC 160 || |||| || ||||||||||||| Sbjct 250 TTGAATAATTACTACAACAACTACCTAATC 221 >seq17805 Length=522 Score = 102 bits (112), Expect = 2e-19 Identities = 115/150 (77%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | ||| || || |||| Sbjct 142 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGC 200 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 201 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 259 Query 131 GTGGGCTATTATCTCACCAACTACCTAATC 160 || |||| || ||||||||||||| Sbjct 260 TTGAATAATTACTACAACAACTACCTAATC 289 >seq17513 Length=543 Score = 102 bits (112), Expect = 2e-19 Identities = 115/150 (77%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | ||| || || |||| Sbjct 314 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGC 256 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 255 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 197 Query 131 GTGGGCTATTATCTCACCAACTACCTAATC 160 || |||| || ||||||||||||| Sbjct 196 TTGAATAATTACTACAACAACTACCTAATC 167 >seq17249 Length=562 Score = 89.7 bits (98), Expect = 1e-15 Identities = 114/152 (75%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCC--TCCCGTAGGAGTCTGGG 69 |||| | |||| |||||||| ||||| | ||||||||||| | | | || | |||| Sbjct 142 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCCCTTTTAGAAAGACT-TGGG 200 Query 70 CCGTGTCTCAGTCCCAATGTGGCCGTTCA-ACCTCTCAGTCCGGCTACCGATCGTCGGCT 128 |||| | |||||||||||||||| | ||| | ||||| || |||| |||||||||| Sbjct 201 CCGT-TTTCAGTCCCAATGTGGCTGATCATTCATCTCAAACCAGCTAAGCATCGTCGGCT 259 Query 129 TGGTGGGCTATTATCTCACCAACTACCTAATC 160 || || |||| || ||||||||||||| Sbjct 260 TGTTGAATAATTACTACAACAACTACCTAATC 291 >seq18098 Length=500 Score = 86.0 bits (94), Expect = 1e-14 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCCAATGTGGC 92 ||||| | ||||||||||| | ||| || || ||||||| | |||||||||||||||| Sbjct 2 AATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-TCAGTCCCAATGTGGC 59 Query 93 CGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 | ||| |||||| || |||| |||||||||||| || |||| || ||||| Sbjct 60 TGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 119 Query 153 ACCTAATC 160 |||||||| Sbjct 120 ACCTAATC 127 >seq18086 Length=501 Score = 86.0 bits (94), Expect = 1e-14 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCCAATGTGGC 92 ||||| | ||||||||||| | ||| || || ||||||| | |||||||||||||||| Sbjct 2 AATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-TCAGTCCCAATGTGGC 59 Query 93 CGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 | ||| |||||| || |||| |||||||||||| || |||| || ||||| Sbjct 60 TGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 119 Query 153 ACCTAATC 160 |||||||| Sbjct 120 ACCTAATC 127 >seq17448 Length=547 Score = 86.0 bits (94), Expect = 1e-14 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCCAATGTGGC 92 ||||| | ||||||||||| | ||| || || ||||||| | |||||||||||||||| Sbjct 546 AATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-TCAGTCCCAATGTGGC 489 Query 93 CGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 | ||| |||||| || |||| |||||||||||| || |||| || ||||| Sbjct 488 TGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 429 Query 153 ACCTAATC 160 |||||||| Sbjct 428 ACCTAATC 421 >seq17788 Length=523 Score = 73.4 bits (80), Expect = 8e-11 Identities = 74/95 (78%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG 125 |||||||| | |||||||||||||||| | ||| |||||| || |||| ||||||| Sbjct 345 TGGGCCGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCG 287 Query 126 GCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||| || |||| || ||||||||||||| Sbjct 286 GCTTGTTGAATAATTACTACAACAACTACCTAATC 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998219309568