Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq16845 78.8 7e-13 seq16584 78.8 7e-13 seq16254 78.8 7e-13 >seq16845 Length=598 Score = 78.8 bits (86), Expect = 7e-13 Identities = 88/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| ||| || ||||||||||||| | | ||||||||||| || Sbjct 465 TACCTTTTATCCGTTAAGCAATAGCCCTTCCATTCAGCACTATTGGATCACTATGGCCGA 406 Query 61 CTTTCGCATCTG-CTCTAGTTGTTGCTCT-CGCAATCAAGCACACTTTTGCCATT 113 |||||| |||| ||| | ||| ||| | || ||||||| ||||| ||||| Sbjct 405 CTTTCGTCTCTGACTCGATCTGTCAATCTACTCAGTCAAGCAATCTTTTACCATT 351 >seq16584 Length=621 Score = 78.8 bits (86), Expect = 7e-13 Identities = 88/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| ||| || ||||||||||||| | | ||||||||||| || Sbjct 117 TACCTTTTATCCGTTAAGCAATAGCCCTTCCATTCAGCACTATTGGATCACTATGGCCGA 176 Query 61 CTTTCGCATCTG-CTCTAGTTGTTGCTCT-CGCAATCAAGCACACTTTTGCCATT 113 |||||| |||| ||| | ||| ||| | || ||||||| ||||| ||||| Sbjct 177 CTTTCGTCTCTGACTCGATCTGTCAATCTACTCAGTCAAGCAATCTTTTACCATT 231 >seq16254 Length=654 Score = 78.8 bits (86), Expect = 7e-13 Identities = 88/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| ||| || ||||||||||||| | | ||||||||||| || Sbjct 376 TACCTTTTATCCGTTAAGCAATAGCCCTTCCATTCAGCACTATTGGATCACTATGGCCGA 317 Query 61 CTTTCGCATCTG-CTCTAGTTGTTGCTCT-CGCAATCAAGCACACTTTTGCCATT 113 |||||| |||| ||| | ||| ||| | || ||||||| ||||| ||||| Sbjct 316 CTTTCGTCTCTGACTCGATCTGTCAATCTACTCAGTCAAGCAATCTTTTACCATT 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351940276600