Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq17248 98.7 1e-18 seq16186 75.2 1e-11 >seq17248 Length=562 Score = 98.7 bits (108), Expect = 1e-18 Identities = 136/187 (73%), Gaps = 25/187 (13%) Strand=Plus/Minus Query 27 ATTAGAGCGTTCAAAGCAGGCC-------TTTGCT-----CGAATACATTACCATGGAAT 74 ||||||| ||||||||||||| ||| || ||||||||||| ||||| || Sbjct 562 ATTAGAGTGTTCAAAGCAGGCAGATCCAATTTTCTGCCACCGAATACATTAGCATGGGAT 503 Query 75 AATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTTTCTAGGACCGCCCG-------- 123 ||| ||||||||| || | ||||||| || ||||| | | | ||| | Sbjct 502 AATGGAATAGGACCCTGTCCTCCTATTTTCAGTTGGTTT-TGGCAGCGCGAGGACTAGGG 444 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||||||| |||| | | |||| |||||||| |||||||||||||| Sbjct 443 TAATGATTAATAGGGATAGTTGGGGCATTAA-TATTTAATTGTCAGAGGTGAAATTCTTG 385 Query 184 GATTTAT 190 ||||||| Sbjct 384 GATTTAT 378 >seq16186 Length=661 Score = 75.2 bits (82), Expect = 1e-11 Identities = 58/68 (85%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||||||| |||| ||||||| |||| | | |||| |||||||| ||||||||||||| Sbjct 33 GTAATGATTAATAGGGATAGTTGGGGCATTAA-TATTTAATTGTCAGAGGTGAAATTCTT 91 Query 183 GGATTTAT 190 |||||||| Sbjct 92 GGATTTAT 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511910233920