Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq17805 111 4e-22 seq17513 111 4e-22 seq18068 109 1e-21 seq17249 98.7 2e-18 seq18098 87.8 4e-15 seq18086 87.8 4e-15 seq17448 87.8 4e-15 >seq17805 Length=522 Score = 111 bits (122), Expect = 4e-22 Identities = 136/181 (75%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 19 GCCTTCT--TCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||| ||| |||| ||| || |||| |||| |||||||||| ||||||| Sbjct 112 GCCTTCTGATCACCCACGTAACATTACTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 171 Query 77 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 ||||||||||| | ||| || | ||| |||| | ||||| ||| |||||||| |||| Sbjct 172 CCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 229 Query 136 CTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||| |||||||| | ||||||| || | || ||||| | |||||| |||||| Sbjct 230 CTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAATC 289 Query 196 C 196 | Sbjct 290 C 290 >seq17513 Length=543 Score = 111 bits (122), Expect = 4e-22 Identities = 136/181 (75%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 19 GCCTTCT--TCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||| ||| |||| ||| || |||| |||| |||||||||| ||||||| Sbjct 344 GCCTTCTGATCACCCACGTAACATTACTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 285 Query 77 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 ||||||||||| | ||| || | ||| |||| | ||||| ||| |||||||| |||| Sbjct 284 CCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 227 Query 136 CTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||| |||||||| | ||||||| || | || ||||| | |||||| |||||| Sbjct 226 CTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAATC 167 Query 196 C 196 | Sbjct 166 C 166 >seq18068 Length=502 Score = 109 bits (120), Expect = 1e-21 Identities = 117/151 (77%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | ||| || | ||| | Sbjct 368 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGC 310 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 165 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||||| || | Sbjct 309 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 251 Query 166 GTGGGCCATTACCCCGCCAACTAGCTAATCC 196 || ||||| | |||||| ||||||| Sbjct 250 TTGAATAATTACTACAACAACTACCTAATCC 220 >seq17249 Length=562 Score = 98.7 bits (108), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 7/183 (4%) Strand=Plus/Plus Query 19 GCCTTCT--TCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||| ||| |||| ||| || |||| |||| |||||||||| ||||||| Sbjct 112 GCCTTCTGATCACCCACGTAACATTACTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 171 Query 77 CCACTGCTGCC--TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCA- 133 ||||||||||| | | | || | ||| |||| | ||||| ||| |||||||| ||| Sbjct 172 CCACTGCTGCCCTTTTAGAAAGACT-TGGGCCGT-TTTCAGTCCCAATGTGGCTGATCAT 229 Query 134 TCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAA 193 || ||||| |||||||| | ||||||| || | || ||||| | |||||| |||| Sbjct 230 TCATCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAA 289 Query 194 TCC 196 ||| Sbjct 290 TCC 292 >seq18098 Length=500 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGC 127 ||||||| ||||||||||| | ||| || | ||| |||| | ||||| ||| |||||| Sbjct 2 AATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGC 59 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 || |||| |||||| |||||||| | ||||||| || | || ||||| | ||||| Sbjct 60 TGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 119 Query 188 AGCTAATCC 196 | ||||||| Sbjct 120 ACCTAATCC 128 >seq18086 Length=501 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGC 127 ||||||| ||||||||||| | ||| || | ||| |||| | ||||| ||| |||||| Sbjct 2 AATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGC 59 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 || |||| |||||| |||||||| | ||||||| || | || ||||| | ||||| Sbjct 60 TGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 119 Query 188 AGCTAATCC 196 | ||||||| Sbjct 120 ACCTAATCC 128 >seq17448 Length=547 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGC 127 ||||||| ||||||||||| | ||| || | ||| |||| | ||||| ||| |||||| Sbjct 546 AATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGC 489 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 || |||| |||||| |||||||| | ||||||| || | || ||||| | ||||| Sbjct 488 TGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 429 Query 188 AGCTAATCC 196 | ||||||| Sbjct 428 ACCTAATCC 420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222178770048