Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq17805 158 4e-36 seq17249 145 2e-32 seq18068 127 6e-27 seq17788 111 5e-22 seq17513 91.5 4e-16 >seq17805 Length=522 Score = 158 bits (174), Expect = 4e-36 Identities = 214/291 (74%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||| | |||| | | |||| ||||||| |||| | |||||| Sbjct 289 GATTAGGTAGTTGTTGTAGTAATTATTCAACAAGCCGACGATGCTTAGCTGGTTTGAGAG 230 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA-CTCCTACGGGAGGCAGCAGTGG 285 ||||| |||||||||| ||||| | |||| |||| || ||| | ||||||||||| Sbjct 229 AATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAGCAGTGG 172 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT--GAAGGC 343 ||||||| ||||||||| ||||| |||| || || | |||| | ||| |||||| Sbjct 171 AGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGGGTGATCAGAAGGC 112 Query 344 CTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAG 400 | | ||||| ||| | || ||||||| |||||| | |||||||| | |||| Sbjct 111 TTAATTGCTGTAAAACTCGTTTCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGAAG 52 Query 401 CCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 ||| | |||||| ||||||||||| |||||||||||| || |||| || || Sbjct 51 CCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGT 1 >seq17249 Length=562 Score = 145 bits (160), Expect = 2e-32 Identities = 213/293 (73%), Gaps = 10/293 (3%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||| | |||| | | |||| ||||||| |||| | ||||| Sbjct 291 GATTAGGTAGTTGTTGTAGTAATTATTCAACAAGCCGACGATGCTTAGCTGGTTTGAGAT 232 Query 227 GG-TGATCGGCCACATTGGAACTGAGACACGGTCCAAAC--TCCTACGGGAGGCAGCAGT 283 | ||||| |||||||||| ||||| | |||| |||| | ||| | ||||||||| Sbjct 231 GAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTTCTAAAAG-GGCAGCAGT 174 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT--GAAG 341 || ||||||| ||||||||| ||||| |||| || || | |||| | ||| |||| Sbjct 173 GGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGGGTGATCAGAAG 114 Query 342 GCCTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGA 398 || | | ||||| ||| | || ||||||| |||||| | |||||||| | || Sbjct 113 GCTTAATTGCTGTAAAACTCGTTTCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGA 54 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 ||||| | |||||| ||||||||||| |||||||||||| || |||| || || Sbjct 53 AGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGT 1 >seq18068 Length=502 Score = 127 bits (140), Expect = 6e-27 Identities = 205/284 (72%), Gaps = 12/284 (4%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||| | |||| | | |||| ||||||| |||| | |||||| Sbjct 221 GATTAGGTAGTTGTTGTAGTAATTATTCAACAAGCCGACGATGCTTAGCTGGTTTGAGAG 280 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA-CTCCTACGGGAGGCAGCAGTGG 285 ||||| |||||||||| ||||| | |||| |||| || ||| | ||||||||||| Sbjct 281 AATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAGCAGTGG 338 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAG-CAACGCCGCGTGAGCGAT--GAAGG 342 ||||||| ||||||||| ||||| |||| || || | |||| | ||| ||||| Sbjct 339 AGAATATTTGACAATGGGCGAAAGCTTGATCGAGATAATGTTACGTGGGTGATCAGAAGG 398 Query 343 CCTTCGGGTCGTAAAGCTC-TGTCCTCAAGGA-AGATAATG---ACGGTACTTGAGGAGG 397 | | | ||||| ||| | || ||||||| |||||| |||||||| | | Sbjct 399 CTTAATTGCTGTAAAACTCGTTTCGTCAAGGATTAATAATGCAATTCGTACTTGAAGGAG 458 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGG-TAATACGTAG 440 |||||| | |||||| ||||||||||| ||||| ||||||| || Sbjct 459 AAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGATAATACGGAG 502 >seq17788 Length=523 Score = 111 bits (122), Expect = 5e-22 Identities = 91/108 (84%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 ||||| |||||| | |||||| ||||||||||| |||||||||||| || |||| || || Sbjct 522 AGGAG-AAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGT 464 Query 452 TATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||| || | | ||| ||| ||||||||||||||||||| || |||||| Sbjct 463 TATTCGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 417 >seq17513 Length=543 Score = 91.5 bits (100), Expect = 4e-16 Identities = 131/180 (73%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||| | |||| | | |||| ||||||| |||| | |||||| Sbjct 167 GATTAGGTAGTTGTTGTAGTAATTATTCAACAAGCCGACGATGCTTAGCTGGTTTGAGAG 226 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA-CTCCTACGGGAGGCAGCAGTGG 285 ||||| |||||||||| ||||| | |||| |||| || ||| | ||||||||||| Sbjct 227 AATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAGCAGTGG 284 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT--GAAGGC 343 ||||||| ||||||||| ||||| |||| || || | |||| | ||| |||||| Sbjct 285 AGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGGGTGATCAGAAGGC 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497328964352