Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq17788 118 3e-24 seq17513 98.7 2e-18 seq16966 89.7 1e-15 >seq17788 Length=523 Score = 118 bits (130), Expect = 3e-24 Identities = 91/107 (85%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 7 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 66 ||||| |||||| | |||||| ||||||||||| |||||||||||| || |||| || || Sbjct 522 AGGAG-AAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGT 464 Query 67 TATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 ||| || | | |||||| ||||||||||||||||||| || |||||| Sbjct 463 TATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 417 >seq17513 Length=543 Score = 98.7 bits (108), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 197 AGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT-GGCGAAGGCGGCTTGCT 255 |||||| |||||||| | |||||| |||| || | ||||||||| ||| || Sbjct 508 AGTGTAAAGGTGAAATTTTTCGATATTTAAAGGACATGCAATAGGCGAAGGCTGCTATCT 449 Query 256 GGACTGTAA--CTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCT 313 | | ||| ||||||||||||| | ||||| | |||| |||||||||||||| ||||| Sbjct 448 --ATTTTAATACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCT 391 Query 314 GGTAGTCCACGCCGTAAACGATGAATA 340 ||||||| | ||| | | ||||||||| Sbjct 390 GGTAGTCTATGCCCTGACCGATGAATA 364 >seq16966 Length=587 Score = 89.7 bits (98), Expect = 1e-15 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||||| | ||||| | |||| |||||||||||||| |||||||||||| | Sbjct 566 ACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGTAGTCTAT 507 Query 324 GCCGTAAACGATGAATA 340 ||| | | ||||||||| Sbjct 506 GCCCTGACCGATGAATA 490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202982244864