Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq17325 354 3e-95 seq15435 282 1e-73 seq18069 141 3e-31 seq18059 141 3e-31 >seq17325 Length=556 Score = 354 bits (392), Expect = 3e-95 Identities = 206/211 (98%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| Sbjct 556 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTC 497 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 496 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 437 Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 436 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGA 377 Query 504 GCAC-TGGGCAGAAATCACATTGCGTCAACA 533 |||| |||||||||||||||||||||||||| Sbjct 376 GCACTTGGGCAGAAATCACATTGCGTCAACA 346 >seq15435 Length=745 Score = 282 bits (312), Expect = 1e-73 Identities = 176/189 (93%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 || |||||||||||||||| |||| |||||||||||||| ||||||||||||||||| Sbjct 557 CGCCTCCCACTTATTCTACGCCTCCAGCGTCATTTCACAAAGCCGGACTAGAGTCAAGCT 616 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 617 CAACAGGGTCTTCTTTCCCCGCTGATCGTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 676 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 677 TGGGTGGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 736 Query 414 ATGACGAGG 422 ||||||||| Sbjct 737 ATGACGAGG 745 Score = 147 bits (162), Expect = 7e-33 Identities = 101/114 (89%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 231 CTTTTGTTCCACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 290 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACC 120 |||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 291 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCCTCAACC 344 >seq18069 Length=502 Score = 141 bits (156), Expect = 3e-31 Identities = 101/115 (88%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 158 CTTTTGTTCCACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 217 Query 67 GTTTAACAGATGTGCCGCCCCAG-CCAAACTCCCCACCTGACAATGTCATCAACC 120 |||||||||||||||||||||| |||||||||||||||||| ||||| |||||| Sbjct 218 TTTTAACAGATGTGCCGCCCCAGCCCAAACTCCCCACCTGACTATGTCCTCAACC 272 >seq18059 Length=503 Score = 141 bits (156), Expect = 3e-31 Identities = 101/115 (88%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 158 CTTTTGTTCCACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 217 Query 67 GTTTAACAGATGTGCCGCCCCAG-CCAAACTCCCCACCTGACAATGTCATCAACC 120 |||||||||||||||||||||| |||||||||||||||||| ||||| |||||| Sbjct 218 TTTTAACAGATGTGCCGCCCCAGCCCAAACTCCCCACCTGACTATGTCCTCAACC 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634904061504