Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq5459 95.1 2e-17 seq18031 89.7 8e-16 >seq5459 Length=2777 Score = 95.1 bits (104), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| | || |||||| |||||||| ||| | || |||| | |||| Sbjct 2340 GTATGAGAGGAACAGTTGA-TTCAGA-TAATTGGTATTTTCCCTTGGCTGAAAGGCCAGT 2283 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | ||| |||||||||| |||||||||||||||||||||||| ||||||| ||| | Sbjct 2282 GGGGAGAACCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGCCAGAATCTGTGCTA 2223 Query 121 G 121 | Sbjct 2222 G 2222 >seq18031 Length=505 Score = 89.7 bits (98), Expect = 8e-16 Identities = 90/113 (80%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 63 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCCTTGGCCGAAAGGCCAGT 120 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | | |||||||||||||| |||||||||||| ||||||||||| ||||||| Sbjct 121 GGGGAGAAGCTACCATCTGTAGGATTATGGCTG-ACGCCTCTAAGCCAGAATC 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819056374272