Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq17177 417 2e-114 seq16319 347 4e-93 seq13882 147 7e-33 seq5198 89.7 2e-15 seq17729 84.2 7e-14 >seq17177 Length=568 Score = 417 bits (462), Expect = 2e-114 Identities = 417/544 (77%), Gaps = 75/544 (14%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||||| Sbjct 543 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTAC 484 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 483 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 424 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 423 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGG 364 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG- 237 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 363 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGT 304 Query 238 --GCTCAAGG-------CCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAGCCCC 287 | ||||| ||||||| || | ||||| ||||||||||| ||||| Sbjct 303 CCCCACAAGGAGGACATGAATGCGATCCGAAAGAGTTACTATGAATCACC-AGGAGTGTT 245 Query 288 GAAG--------GGC-GTTGGTTTTTTAT-CTAATAAATACACCCCT-------TCCGAA 330 |||| ||| | |||||||| || |||||||||||| |||| | ||| Sbjct 244 GAAGCCGTTGCCGGCTGCTGGTTTTTAATCCTAATAAATACATCCCTCTGCGCATGCGAG 185 Query 331 G-----------------------------TCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 | ||||| || |||||||||||||||||| Sbjct 184 GACGAGGCCGTGAAGCCCCGCCCCCCGCGCTCGGGACCTTGCGCATGTATTAGCTCTAGA 125 Query 362 ATTACCACGGTTATCCATGTAG--------------TAAGGTACTATCAAATAAACGATA 407 ||||||||||||||||| |||| ||| || ||||||||||| ||| Sbjct 124 ATTACCACGGTTATCCAAGTAGGTAAAAAAAAGACAAAAGAGACCATCAAATAAACTATA 65 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCA 466 |||||||||||||||||| |||||| || | ||||| | ||||||||||||||||||| Sbjct 64 ACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAGCTTATACTTAGACATGCA 5 Query 467 TGGC 470 |||| Sbjct 4 TGGC 1 >seq16319 Length=647 Score = 347 bits (384), Expect = 4e-93 Identities = 288/346 (83%), Gaps = 23/346 (7%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||||||| | | || ||||||| ||||||||||||||||| Sbjct 383 GTACTCATTCCAATTACAAGACTCTTATCGACGCCTGTATTGTTATTTATTGTCACTACC 324 Query 60 TCCCCGTGTCGGG-ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| Sbjct 323 TCCCCGTGTCGGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 264 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 263 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGG 204 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG- 237 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 203 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGT 144 Query 238 --GCTCAAGG-------CCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAGCCCC 287 | ||||| ||||||| || | ||||| ||||||||||| ||||| Sbjct 143 CCCCACAAGGAGGACATGAATGCGATCCGAAAGAGTTACTATGAATCACC-AGGAGTGTT 85 Query 288 GAAG--------GGC-GTTGGTTTTTTATCTAATAAATACACCCCT 324 |||| ||| | |||||||| | |||||||||||| |||| Sbjct 84 GAAGCCGTTGCCGGCTGCTGGTTTTTAACCTAATAAATACATCCCT 39 >seq13882 Length=977 Score = 147 bits (162), Expect = 7e-33 Identities = 97/106 (92%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTA 458 |||| ||||||||||||||||||||| |||||| || | ||||| | ||||||||||| Sbjct 1 AAACTATAACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAGCTTATACTTA 60 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 106 >seq5198 Length=2913 Score = 89.7 bits (98), Expect = 2e-15 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 861 ACCATGGTAGGCCTCTATCCTACCATTGAAAGTTGATAGGGCAGAAATTTGAAT 914 >seq17729 Length=526 Score = 84.2 bits (92), Expect = 7e-14 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||||||| | | || ||||||| ||||||||||||||||| Sbjct 73 GTACTCATTCCAATTACAAGACTCTTATCGACGCCTGTATTGTTATTTATTGTCACTACC 14 Query 60 TCCCCGTGTCGGG 72 ||||||||||||| Sbjct 13 TCCCCGTGTCGGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510126647808