Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq378 293 2e-74 seq4651 203 3e-47 >seq378 Length=11515 Score = 293 bits (324), Expect = 2e-74 Identities = 929/1425 (65%), Gaps = 40/1425 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| |||||||||||||| || || || | | ||| | ||| |||||||||||||| Sbjct 5748 ATCGACGGTGAACTGGATCGCGTTGGCGGCGGGCCGGGTGCGAAGGTAGTACATGCCGGT 5689 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||||||||| ||||| || ||||| |||||||| | | || ||| | ||||| Sbjct 5688 CTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCAAACGAGGGCTC 5629 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCA-CGATCTGCAGCCA 65255 | ||| | | || | |||||| ||||| |||||||| | | | ||||| || |||| Sbjct 5628 GCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAG-GCCGAGCGATCGGCGGCCA 5570 Query 65256 TGTCAATGAT-ACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTC 65313 |||| ||||| ||| || || | |||||| ||||||||||||| || | | | || Sbjct 5569 TGTCGATGATGACG-CGCTGCGGGAGCTCCCACACGGTCTTGTACA-GCTTCTTGATGTC 5512 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC-- 65371 || |||||||| ||| |||||| || | || |||| | | | | || | Sbjct 5511 GTCGGGGATCTCCTCGATGCGCTGGACCGAGC--CGTTGTGCGA-GACGAGCTTGTTCTT 5455 Query 65372 -ATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGAC 65430 | || ||||| | || | || | | | | ||| |||| ||| Sbjct 5454 GAGCGCGGGCGACCAGAGGCCGCGCTGCTGGAGCTCGCGCAGAAGGTGCTCGTTGACGAC 5395 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 ||| ||||||| || | || ||| |||||||||| |||| ||| |||||| | Sbjct 5394 GGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCA 5335 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || ||||||| || || || | || || || || |||||||| || || | | || Sbjct 5334 CTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGA 5275 Query 65551 GTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTT 65610 ||| |||| |||| | | |||||| || | | |||||| |||| | || Sbjct 5274 GTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAGTCCCAC--CTGT-- 5219 Query 65611 ATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACC 65670 || || || | ||| ||| | || | || || | || | || || || || Sbjct 5218 -CCGACGGCA-CGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCGGGCGAGCC 5161 Query 65671 GAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGC 65730 | | | | ||| ||||| ||| || || | || | || ||||| Sbjct 5160 CTCGTAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAGGCGACCAGGGCGGC 5101 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGG 65790 | || ||||||||||| ||| || || || || || ||||| |||||||| |||| Sbjct 5100 GTAGTAGATGGTCTCGAAGATGGCGCGGTTGAGCTCGCGGGCCTCGTCGCTCTCCCACGG 5041 Query 65791 CATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 | ||| | | || ||||||||| || || ||||| || |||||||| | || Sbjct 5040 GTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGTG 4981 Query 65851 ACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 |||| || || | ||||| || || |||||||| ||||| ||||| | || Sbjct 4980 GCGCATGTTCGAGTTGCGGGCCTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTT 4921 Query 65911 CAAATTGCGTGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTA 65968 | || || ||||| | |||| ||||| ||| | | | ||||| | Sbjct 4920 GAGGTTCTTGGTGACCACCTTCACG--ACGTCGTGCAGCTTCTGGTGGTCAAACT----- 4868 Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028 | || | | || || |||||||| || || || || || ||||||||| Sbjct 4867 CGCCGTTGGTGA-TG------------AACTTGGGCAGCGCGAGCGAGGCCAGGTTGCAG 4821 Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088 || || | |||||| || | || |||| ||| | || |||||||| || | | Sbjct 4820 ACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTGA 4761 Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148 |||||||| | | ||| || || ||||| ||||| || |||||||||| |||||| Sbjct 4760 ATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAG 4701 Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 || ||||||||||| | || ||||| | ||||||| ||| || | | ||||| ||| Sbjct 4700 GGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGACC 4641 Query 66209 GTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 || ||| | || | | ||||| | ||||| | ||||| | ||| Sbjct 4640 ACGCGGCGCGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCC 4581 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328 || ||| |||| | || || || || || | |||||||| || || || Sbjct 4580 CACGAGTCGAACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCCCGTC 4521 Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 || || || ||| || || || || ||||| ||| |||||||||||||||| || || Sbjct 4520 TCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGG 4461 Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 | |||||| ||||||| || || || ||||||||| ||||||||||| || ||||| Sbjct 4460 TTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAG 4401 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCT 66493 || || |||||||||||||| | ||| | || || || || ||| Sbjct 4400 GGCTCGAGGTAGATGGCGAAAGCACCCTTGCGCTTACCACCTCCT 4356 >seq4651 Length=3183 Score = 203 bits (224), Expect = 3e-47 Identities = 405/590 (69%), Gaps = 9/590 (2%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||||||| | || || ||| |||||||| ||||| || Sbjct 1008 CGATTCGTGCTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAG 1067 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CG 61172 || ||||||||||||| ||||| |||||| || | |||||||| ||||||| || Sbjct 1068 GCCTCCTTCTGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAATCG 1127 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | | | | || || || ||||| || || || ||||| ||||| || ||| || Sbjct 1128 CTCAACAA-CGACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGA 1186 Query 61233 CGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGC 61292 ||| ||||| |||||| | | || ||| | |||||||||| ||| | ||||| Sbjct 1187 CGGCATCGTGGCCGAGAATCTCGCCGGCCGCTTCATGAAGGAGGTGCAGGTGCCCGAGGC 1246 Query 61293 GCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGT 61352 ||| || ||||||||||| || || ||||| ||||| ||||||| ||||||||| | Sbjct 1247 GCGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCT 1306 Query 61353 TCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCG 61411 |||||||| || ||| ||| ||| | | || | | || || | ||| ||||||| Sbjct 1307 CCTCATCGACACCTACGTCAAGGACTCCGTCGAGAAG-GACCGCCTCTTCCGCGCCATCG 1365 Query 61412 AGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGTACA 61470 |||| | || |||| ||| ||| || || ||||| | || |||||| || || | Sbjct 1366 AGACCGTGCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGG 1425 Query 61471 ACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCA 61528 || | || || | || || | | | ||| || | |||||||| | || ||| Sbjct 1426 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 1485 Query 61529 GTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || | | | || | | ||||| ||| | ||||| || || || |||||||| || || Sbjct 1486 CCGGCAGCTTCTG-CTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 1544 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||||| || ||| |||| ||||| |||||| | || || || || || Sbjct 1545 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGC 1594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397480308674720