Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq58397 194 3e-47 seq60037 107 3e-21 >seq58397 Length=2976 Score = 194 bits (214), Expect = 3e-47 Identities = 130/141 (92%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 776 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 833 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| |||||||| Sbjct 834 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAGATT 893 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||||||||| |||||| ||| Sbjct 894 ACCCGGACCTATCGGCCCAGG 914 Score = 140 bits (154), Expect = 5e-31 Identities = 85/89 (96%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 978 GACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1037 Query 206 ACCTGTTATTGCCTCAAACTTCCG-TGGC 233 |||||||||||||||||||||||| |||| Sbjct 1038 ACCTGTTATTGCCTCAAACTTCCGCTGGC 1066 >seq60037 Length=20208 Score = 107 bits (118), Expect = 3e-21 Identities = 66/69 (96%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 17662 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCCCAGACCTGTTATTGCCTCAAAAT 17721 Query 226 TCCG-TGGC 233 |||| |||| Sbjct 17722 TCCGCTGGC 17730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751559330350