Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq57158 178 5e-42 seq12471 111 7e-22 seq35499 95.1 5e-17 >seq57158 Length=5488 Score = 178 bits (196), Expect = 5e-42 Identities = 239/337 (71%), Gaps = 37/337 (11%) Strand=Plus/Minus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || || | | || ||||||||| ||||||||||||||||||||||| Sbjct 1444 GATGCTGGCGGAACGGCGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAC 1385 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAG-------------TGAA 488 | |||||||| ||||| |||||| | ||||| | |||||| | | Sbjct 1384 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGGAGTGAAAGCAGAGGGCGGCATTAAG 1325 Query 489 CGG-------AGGTGGGAACCCGTGAGGGTGC--------------ACCATCGACCGATC 527 ||| ||||||||| ||| | |||| |||| || |||| | Sbjct 1324 CGGTCGCCTGAGGTGGGAAGGGGTGCGCGTGCGCGCGTGCTCCCGCACCACCGGCCGACC 1265 Query 528 CTGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586 ||| | ||| || || |||||| ||||| || |||||||||||||||||| |||| Sbjct 1264 TGGATTTTCTT--GAAGGGTTTGAGCCAGAGCGTATTTGTTGGGACCCGAAAGATTGTGA 1207 Query 587 ACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGG 646 |||||| ||| ||| |||||||||||||||||||||||||| || || | | ||| Sbjct 1206 ACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTGA 1147 Query 647 CGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| || || | ||| ||||||||||| Sbjct 1146 CGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 1110 >seq12471 Length=140 Score = 111 bits (122), Expect = 7e-22 Identities = 102/127 (80%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 76 GGTAAATTTCTTCTAAAGCTAAATATTG---GCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| | | || ||||||||||| || |||||||||||||| ||||||| || Sbjct 1 GGTAAATCCCACCCAAGGCTAAATATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGT 60 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 || ||||||||||||| |||||| |||||||| | ||||| | |||||||||| || Sbjct 61 GAGGGAAAGATGAAAAGGACTTTGAAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAG 119 Query 193 GGAAGCG 199 ||||||| Sbjct 120 GGAAGCG 126 >seq35499 Length=127 Score = 95.1 bits (104), Expect = 5e-17 Identities = 80/98 (82%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 29 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGGGGTAAATCCCACCCAAGGCTAAAT 88 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGA 134 |||| || |||||||||||||| ||||||| |||| Sbjct 89 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGA 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078702489500