Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq59117 86.0 2e-14 seq37432 84.2 6e-14 seq25207 78.8 2e-12 >seq59117 Length=9635 Score = 86.0 bits (94), Expect = 2e-14 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT-GGCGAAGGCAGCCCCCTG 258 ||||| ||||||| | ||||| | |||| |||| ||||||||| || || Sbjct 5640 GTGTAAAGGTGAAATTTTTCGATATTTAAAGGACATGCAATAGGCGAAGGCTGCTATCTA 5699 Query 259 GGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 318 ||| |||||| || | |||| ||||| | |||| |||||||||||||| |||||||| Sbjct 5700 TTTTAATACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGT 5759 Query 319 AGTCCACGCCCTAAACGAT 337 |||| | ||||| | |||| Sbjct 5760 AGTCTATGCCCTGACCGAT 5778 >seq37432 Length=87 Score = 84.2 bits (92), Expect = 6e-14 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 25 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGG 84 ||||| ||||||||||| |||||||||||| || | ||||| |||| ||| | | ||||| Sbjct 87 TAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGG 28 Query 85 GCGTAAAGCGTGCGCAGGCGG-TTGT 109 | |||||| ||||| ||| || |||| Sbjct 27 GTGTAAAGGGTGCGTAGGTGGCTTGT 2 >seq25207 Length=81 Score = 78.8 bits (86), Expect = 2e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 25 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGG 84 ||||| ||||||||||| |||||||||||| || | ||||| |||| ||| | | ||||| Sbjct 81 TAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGG 22 Query 85 GCGTAAAGCGTGCGCAGGCGG 105 | | |||| ||||| ||| || Sbjct 21 GTGCAAAGGGTGCGTAGGTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288819920960